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Search of human proteins with 197382691
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197382691 haloacid dehalogenase-like hydrolase domain
containing 1A isoform b [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197382691 haloacid dehalogenase-like hydrolase domain contain... 456 e-128
gi|207113149 haloacid dehalogenase-like hydrolase domain contain... 442 e-125
gi|22907049 aldehyde dehydrogenase 3A1 [Homo sapiens] 32 0.34
gi|206597441 aldehyde dehydrogenase 3A1 [Homo sapiens] 32 0.34
gi|206597439 aldehyde dehydrogenase 3A1 [Homo sapiens] 32 0.34
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 31 0.77
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 31 0.77
gi|23308749 N-acetylneuraminic acid phosphatase [Homo sapiens] 31 1.00
gi|7705433 eukaryotic translation initiation factor 3 subunit 6 ... 30 1.3
gi|14589929 protocadherin 18 precursor [Homo sapiens] 30 1.7
gi|7706501 WW domain binding protein 11 [Homo sapiens] 30 2.2
gi|34878777 ring finger protein 20 [Homo sapiens] 29 2.9
gi|38348382 spermatogenesis associated 21 [Homo sapiens] 29 3.8
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 28 6.5
gi|110347568 centrosomal protein 152kDa [Homo sapiens] 28 6.5
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 28 8.5
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 28 8.5
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 28 8.5
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 28 8.5
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 28 8.5
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 28 8.5
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 28 8.5
gi|48928019 Nedd4 binding protein 1 [Homo sapiens] 28 8.5
gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo sapi... 28 8.5
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 28 8.5
>gi|197382691 haloacid dehalogenase-like hydrolase domain containing
1A isoform b [Homo sapiens]
Length = 228
Score = 456 bits (1172), Expect = e-128
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MAAPPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQI 60
MAAPPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQI
Sbjct: 1 MAAPPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQI 60
Query: 61 IIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASF 120
IIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASF
Sbjct: 61 IIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASF 120
Query: 121 DMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNG 180
DMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNG
Sbjct: 121 DMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNG 180
Query: 181 VEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 228
VEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE
Sbjct: 181 VEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 228
>gi|207113149 haloacid dehalogenase-like hydrolase domain containing
1A isoform a [Homo sapiens]
Length = 251
Score = 442 bits (1138), Expect = e-125
Identities = 228/251 (90%), Positives = 228/251 (90%), Gaps = 23/251 (9%)
Query: 1 MAAPPQPVTHLIFDMDGLLL-----------------------DTERLYSVVFQEICNRY 37
MAAPPQPVTHLIFDMDGLLL DTERLYSVVFQEICNRY
Sbjct: 1 MAAPPQPVTHLIFDMDGLLLGYTGSIVAAASGESSRGLQSRWTDTERLYSVVFQEICNRY 60
Query: 38 DKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEK 97
DKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEK
Sbjct: 61 DKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEK 120
Query: 98 LIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLA 157
LIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLA
Sbjct: 121 LIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLA 180
Query: 158 CAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDF 217
CAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDF
Sbjct: 181 CAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDF 240
Query: 218 QPELFGLPSYE 228
QPELFGLPSYE
Sbjct: 241 QPELFGLPSYE 251
>gi|22907049 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 32.3 bits (72), Expect = 0.34
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 53 KALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALA 112
++LE A I+ + P++ + K + T++ A +I+H+ H +PF
Sbjct: 346 RSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGV 405
Query: 113 TSSGSASFDMKTSRHKEFFSLFSH 136
+SG S+ K S F FSH
Sbjct: 406 GNSGMGSYHGKKS-----FETFSH 424
>gi|206597441 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 32.3 bits (72), Expect = 0.34
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 53 KALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALA 112
++LE A I+ + P++ + K + T++ A +I+H+ H +PF
Sbjct: 346 RSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGV 405
Query: 113 TSSGSASFDMKTSRHKEFFSLFSH 136
+SG S+ K S F FSH
Sbjct: 406 GNSGMGSYHGKKS-----FETFSH 424
>gi|206597439 aldehyde dehydrogenase 3A1 [Homo sapiens]
Length = 453
Score = 32.3 bits (72), Expect = 0.34
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 53 KALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALA 112
++LE A I+ + P++ + K + T++ A +I+H+ H +PF
Sbjct: 346 RSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGV 405
Query: 113 TSSGSASFDMKTSRHKEFFSLFSH 136
+SG S+ K S F FSH
Sbjct: 406 GNSGMGSYHGKKS-----FETFSH 424
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 31.2 bits (69), Expect = 0.77
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 143 PEVQHGKPDPDIFLACAK-RFSP---PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGN 198
P+ G+P P + L + R SP P ++ + ++ ++A +A +Q + G+
Sbjct: 308 PQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 367
Query: 199 LSRDLTTKATLVLNSLQ--DFQPEL 221
L DL TKAT+ L +L+ +FQ +L
Sbjct: 368 LPPDLRTKATVELKALRLLNFQRQL 392
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 31.2 bits (69), Expect = 0.77
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 143 PEVQHGKPDPDIFLACAK-RFSP---PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGN 198
P+ G+P P + L + R SP P ++ + ++ ++A +A +Q + G+
Sbjct: 308 PQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 367
Query: 199 LSRDLTTKATLVLNSLQ--DFQPEL 221
L DL TKAT+ L +L+ +FQ +L
Sbjct: 368 LPPDLRTKATVELKALRLLNFQRQL 392
>gi|23308749 N-acetylneuraminic acid phosphatase [Homo sapiens]
Length = 248
Score = 30.8 bits (68), Expect = 1.00
Identities = 50/222 (22%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 8 VTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQL 67
V + FD+D L+DT E+ KY + E A+II D +Q+
Sbjct: 6 VRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYK-----------EEAEIICDKVQV 54
Query: 68 PMSK------------------EELVEESQ-----TKLKEV---------FPTAALMPGA 95
+SK EE ++E++ KL E L
Sbjct: 55 KLSKECFHPYNTCITDLRTSHWEEAIQETKGGAANRKLAEECYFLWKSTRLQHMTLAEDV 114
Query: 96 EKLIIHLRKHGIPFALATSSGSASFDMKTSRHK----EFFSLFSHIVLGDDPEVQHGKPD 151
+ ++ LRK + L T+ D +T R K S F +V+G E + KP
Sbjct: 115 KAMLTELRKE-VRLLLLTNG-----DRQTQREKIEACACQSYFDAVVVGG--EQREEKPA 166
Query: 152 PDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVM 193
P IF C P + +V + ++ L AG++ +
Sbjct: 167 PSIFYYCCNLLGVQPG-DCVMVGDTLETDIQGGLNAGLKATV 207
>gi|7705433 eukaryotic translation initiation factor 3 subunit 6
interacting protein [Homo sapiens]
Length = 564
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 29 VFQEICNRYDKKYSWDVKSLVMGKK-ALEAAQIIIDVLQLPMSK-EELVEESQTKLKEVF 86
V E+ + + + V L+ K L+A+++ DV+ + + +++ E S TKL E F
Sbjct: 47 VIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERF 106
Query: 87 PTAALMPGAEKLIIHLRKHGIPFAL----------ATSSGSASFDMKTSRHKEFFSLFSH 136
P AE + + + L A SG S + + + + +LF++
Sbjct: 107 FKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNY 166
Query: 137 IVLGDDP 143
I+ D P
Sbjct: 167 ILNADGP 173
>gi|14589929 protocadherin 18 precursor [Homo sapiens]
Length = 1135
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 15 MDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEA-AQIIIDVLQLPMSKEE 73
M+ +D+ER + +F+++ K Y DV++ +G ++ A +III V+ + +K E
Sbjct: 294 METFKIDSERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPE 353
Query: 74 L 74
+
Sbjct: 354 I 354
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 29.6 bits (65), Expect = 2.2
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 44 DVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIH-- 101
D K ++ + L+ + + +Q P E+++++ + KL+E F + E I+
Sbjct: 49 DPKQIIRDMEKLDEMEF--NPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKE 106
Query: 102 LRKHGIPFALATSSGSASFD-MKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAK 160
LRK + + + S FD +K ++H E S I L D P DI L A+
Sbjct: 107 LRKLEVEYEQKRAQLSQYFDAVKNAQHVEVES----IPLPDMPHAPSNILIQDIPLPGAQ 162
Query: 161 RFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDG 197
PP ++K + V G V +P G
Sbjct: 163 ---PPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPG 196
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 38 DKKYSWDVKSLVMGK-KALEAAQIIIDV---LQLPMSK-----EELVEESQTKLKEVF 86
+K+ ++L M K KA+EAAQ+ D+ L+L K +E+VE S TK K++F
Sbjct: 820 EKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEKDMF 877
>gi|38348382 spermatogenesis associated 21 [Homo sapiens]
Length = 469
Score = 28.9 bits (63), Expect = 3.8
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 3 APPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIII 62
AP P T L+F++ LL++ L V +EI N Y KK +K + +EAA +
Sbjct: 303 APHNPHT-LLFEILSLLVEMLALPEAVLEEITNYYQKK----LKEGTCKAQEMEAAVGRL 357
Query: 63 DVLQLPMSKEELVEES 78
+ +LP + ++ EES
Sbjct: 358 RLQKLPYNPQQ--EES 371
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 28.1 bits (61), Expect = 6.5
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 52 KKALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLI---IHLRKHGIP 108
+K A + +D+L+L + ++ Q +++ PTAAL PGA + + L+ P
Sbjct: 11 EKRCPGAVVPVDLLKLARTVSRQ-QQQQHLHRQLPPTAALAPGAPRAARGSVPLQPPLPP 69
Query: 109 FALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAM 168
AL SG A RH F H HG+ P + PPP +
Sbjct: 70 AALGAYSGGAG----PIRHHHPAHHFHH----------HGQAQPGLHPPLPP--PPPPQL 113
Query: 169 EKCLVFEDA 177
V DA
Sbjct: 114 PGARVLVDA 122
>gi|110347568 centrosomal protein 152kDa [Homo sapiens]
Length = 1654
Score = 28.1 bits (61), Expect = 6.5
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 4 PPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIID 63
P + V F G L DTE + C RY Y L LE +I ++
Sbjct: 1546 PSESVKSKQFSPSGYLSDTEESNMICQTMKCQRYQTPY------LSEETTYLEPGKISVN 1599
Query: 64 VLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHL 102
K + ++ KL P++ + KLI+ L
Sbjct: 1600 CGHPSRHKADRLKSDFKKLSSTLPSSVCQQPSRKLIVPL 1638
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 165 PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQ--DFQPEL 221
P ++ + ++ ++A +A +Q + G+L+ DL TKAT+ L +L+ +FQ +L
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQL 416
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 165 PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQ--DFQPEL 221
P ++ + ++ ++A +A +Q + G+L+ DL TKAT+ L +L+ +FQ +L
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQL 416
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 165 PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQ--DFQPEL 221
P ++ + ++ ++A +A +Q + G+L+ DL TKAT+ L +L+ +FQ +L
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQL 416
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 165 PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQ--DFQPEL 221
P ++ + ++ ++A +A +Q + G+L+ DL TKAT+ L +L+ +FQ +L
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQL 416
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 165 PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQ--DFQPEL 221
P ++ + ++ ++A +A +Q + G+L+ DL TKAT+ L +L+ +FQ +L
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQL 416
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 165 PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQ--DFQPEL 221
P ++ + ++ ++A +A +Q + G+L+ DL TKAT+ L +L+ +FQ +L
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQL 416
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 165 PPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQ--DFQPEL 221
P ++ + ++ ++A +A +Q + G+L+ DL TKAT+ L +L+ +FQ +L
Sbjct: 358 PRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQL 416
>gi|48928019 Nedd4 binding protein 1 [Homo sapiens]
Length = 896
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 57 AAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGA 95
AA+ ++D P K EL+E+S+ +++ +F + + GA
Sbjct: 2 AARAVLDEFTAPAEKAELLEQSRGRIEGLFGVSLAVLGA 40
>gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo
sapiens]
Length = 600
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 61 IIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKH 105
+I +L++ + +EE +++SQ + PT L ++++ H KH
Sbjct: 64 VIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKH 108
>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
Length = 731
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 59 QIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSA 118
Q+ + L L SK+EL++ Q + ++ EKLI L K G F SS ++
Sbjct: 413 QVKLYKLNLESSKQELIDYKQKATR-------ILQSKEKLINSL-KEGSGFEGLDSSTAS 464
Query: 119 SFDMKTSRHKE 129
S +++ RH++
Sbjct: 465 SMELEELRHEK 475
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,197,256
Number of Sequences: 37866
Number of extensions: 396593
Number of successful extensions: 813
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 25
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.