Search of human proteins with 197313654

Search of human proteins with 197313654

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197313654 TBCC domain containing 1 [Homo sapiens]
         (557 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197313654 TBCC domain containing 1 [Homo sapiens]                 1140   0.0  
gi|8922517 TBCC domain containing 1 [Homo sapiens]                   1140   0.0  
gi|170016081 XRP2 protein [Homo sapiens]                               62   1e-09
gi|4507373 beta-tubulin cofactor C [Homo sapiens]                      46   8e-05
gi|42476009 highly divergent homeobox [Homo sapiens]                   32   1.2  
gi|121114302 cullin 4B isoform 2 [Homo sapiens]                        31   2.6  
gi|121114298 cullin 4B isoform 1 [Homo sapiens]                        31   2.6  
gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]           30   5.8  
gi|28372497 ubiquitin protein ligase E3 component n-recognin 1 [...    30   5.8  
gi|21735569 claspin [Homo sapiens]                                     30   7.6  
gi|4502415 Burkitt lymphoma receptor 1 isoform 1 [Homo sapiens]        30   7.6  
gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens]        30   7.6  
gi|153792604 protein prenyltransferase alpha subunit repeat cont...    30   7.6  
gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Ho...    29   9.9  
gi|4502359 brain-specific angiogenesis inhibitor 3 [Homo sapiens]      29   9.9  
gi|21361914 semaphorin B [Homo sapiens]                                29   9.9  

>gi|197313654 TBCC domain containing 1 [Homo sapiens]
          Length = 557

 Score = 1140 bits (2950), Expect = 0.0
 Identities = 557/557 (100%), Positives = 557/557 (100%)

Query: 1   MDQSRVLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHI 60
           MDQSRVLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHI
Sbjct: 1   MDQSRVLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHI 60

Query: 61  ACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQF 120
           ACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQF
Sbjct: 61  ACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQF 120

Query: 121 LLFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLS 180
           LLFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLS
Sbjct: 121 LLFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLS 180

Query: 181 DLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHA 240
           DLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHA
Sbjct: 181 DLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHA 240

Query: 241 DSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKKLAWAHQVEGTTKRAKIACNT 300
           DSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKKLAWAHQVEGTTKRAKIACNT
Sbjct: 241 DSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKKLAWAHQVEGTTKRAKIACNT 300

Query: 301 HVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSI 360
           HVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSI
Sbjct: 301 HVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSI 360

Query: 361 FVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFH 420
           FVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFH
Sbjct: 361 FVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFH 420

Query: 421 THYPMLEDHMARTGLATVPNYWDNPMVVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTT 480
           THYPMLEDHMARTGLATVPNYWDNPMVVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTT
Sbjct: 421 THYPMLEDHMARTGLATVPNYWDNPMVVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTT 480

Query: 481 EIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQ 540
           EIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQ
Sbjct: 481 EIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQ 540

Query: 541 QLDSLVPPAAGSKQAAG 557
           QLDSLVPPAAGSKQAAG
Sbjct: 541 QLDSLVPPAAGSKQAAG 557


>gi|8922517 TBCC domain containing 1 [Homo sapiens]
          Length = 557

 Score = 1140 bits (2950), Expect = 0.0
 Identities = 557/557 (100%), Positives = 557/557 (100%)

Query: 1   MDQSRVLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHI 60
           MDQSRVLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHI
Sbjct: 1   MDQSRVLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHI 60

Query: 61  ACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQF 120
           ACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQF
Sbjct: 61  ACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQF 120

Query: 121 LLFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLS 180
           LLFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLS
Sbjct: 121 LLFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLS 180

Query: 181 DLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHA 240
           DLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHA
Sbjct: 181 DLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQPLHA 240

Query: 241 DSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKKLAWAHQVEGTTKRAKIACNT 300
           DSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKKLAWAHQVEGTTKRAKIACNT
Sbjct: 241 DSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKKLAWAHQVEGTTKRAKIACNT 300

Query: 301 HVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSI 360
           HVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSI
Sbjct: 301 HVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSI 360

Query: 361 FVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFH 420
           FVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFH
Sbjct: 361 FVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFH 420

Query: 421 THYPMLEDHMARTGLATVPNYWDNPMVVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTT 480
           THYPMLEDHMARTGLATVPNYWDNPMVVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTT
Sbjct: 421 THYPMLEDHMARTGLATVPNYWDNPMVVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTT 480

Query: 481 EIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQ 540
           EIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQ
Sbjct: 481 EIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQ 540

Query: 541 QLDSLVPPAAGSKQAAG 557
           QLDSLVPPAAGSKQAAG
Sbjct: 541 QLDSLVPPAAGSKQAAG 557


>gi|170016081 XRP2 protein [Homo sapiens]
          Length = 350

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 311 VMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTL 370
           + S +  +T+ +   T+AG    I  C    IY+     +VTI+ C N I  LGPV  ++
Sbjct: 41  MFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSV 100

Query: 371 HLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHM 430
              +C + K    C +  +         +   T+P+I S +  + F  F  +YP L    
Sbjct: 101 FFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIES-SSNIKFGCFQWYYPELAFQF 159

Query: 431 ARTGLATVPNYWDN 444
              GL+   N W N
Sbjct: 160 KDAGLSIFNNTWSN 173


>gi|4507373 beta-tubulin cofactor C [Homo sapiens]
          Length = 346

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 313 SQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHL 372
           S +  Q L K +  L    V +   +   + L     ++ + K  +   + GPV T++ L
Sbjct: 187 SNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFL 246

Query: 373 HSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHMAR 432
             C +  +   C +L I ST      +   +R ++      + FAP+   YP ++     
Sbjct: 247 EDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIV-EDCSGIQFAPYTWSYPEIDKDFES 305

Query: 433 TGLATVPNYWDN 444
           +GL    N W++
Sbjct: 306 SGLDRSKNNWND 317


>gi|42476009 highly divergent homeobox [Homo sapiens]
          Length = 690

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 408 LSGNQTVTFAPFHTHYPMLEDH--MARTGLATVPNYWDNPMV----VCRENSDTRVFQLL 461
           +SGN TV +    +    L+D    +   LAT+  YWDN M     VCRE  +    +L 
Sbjct: 418 ISGNLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELN 477

Query: 462 PPCE 465
             CE
Sbjct: 478 VDCE 481


>gi|121114302 cullin 4B isoform 2 [Homo sapiens]
          Length = 895

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 53  YWSTWRHIACGKLQLAKDLAWLYFEIFDSLSM-KTPEERLEWSEVLSNCMSEEEVEKQRN 111
           YW T+  +   ++ L  ++  L  EIF +  + K    +L+W   L +C+ + E ++ + 
Sbjct: 668 YWPTYVPM---EVHLPPEMVKLQ-EIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKK 723

Query: 112 QLSVDTLQFLLFLYIQQLNKVSL 134
           +L V   Q L+ L   +  + SL
Sbjct: 724 ELQVSLFQTLVLLMFNEGEEFSL 746


>gi|121114298 cullin 4B isoform 1 [Homo sapiens]
          Length = 913

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 53  YWSTWRHIACGKLQLAKDLAWLYFEIFDSLSM-KTPEERLEWSEVLSNCMSEEEVEKQRN 111
           YW T+  +   ++ L  ++  L  EIF +  + K    +L+W   L +C+ + E ++ + 
Sbjct: 686 YWPTYVPM---EVHLPPEMVKLQ-EIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKK 741

Query: 112 QLSVDTLQFLLFLYIQQLNKVSL 134
           +L V   Q L+ L   +  + SL
Sbjct: 742 ELQVSLFQTLVLLMFNEGEEFSL 764


>gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]
          Length = 4471

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 363 LGPVGTTL---HLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPF 419
           L PV T L   H  + DNV+ ++   R   + T G  FHV+  T P ++S  + V     
Sbjct: 320 LQPVFTELFKFHTEASDNVRFLSTVERYFKNITHGSGFHVVLDTIPAMMSALRMVWIISR 379

Query: 420 H 420
           H
Sbjct: 380 H 380


>gi|28372497 ubiquitin protein ligase E3 component n-recognin 1
           [Homo sapiens]
          Length = 1749

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 166 WNDYSHQAFVYDHLSDLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLI-----EGTI 220
           +ND  H    YDH+   L+  LD +   A  H+T      R AV A ++       E   
Sbjct: 231 FNDEHHS---YDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQEAKEDIK 287

Query: 221 SRARKI--YPLHELALWQPLHADSGF-----SKISKTFSFYK--LETWLRSCLTGNPFGT 271
           S +  +  +PLH   L   + A   F     S ++K  S+     + + ++CL   P   
Sbjct: 288 SHSENVSQHPLHVEVLHSEIMAHQKFALRLGSWMNKIMSYSSDFRQIFCQACLREEPDSE 347

Query: 272 SACLKSGKKLAWAHQVEGTTK 292
           + CL S   L  A   +G  K
Sbjct: 348 NPCLISRLMLWDAKLYKGARK 368


>gi|21735569 claspin [Homo sapiens]
          Length = 1339

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 240 ADSGFSKISKTFSFYKLETWLRSCL-----TGNPFGTSACLKSGKKLAWAHQVEGTTKRA 294
           ADS  S + K+     LE  ++ CL     +GN    +   KS KK    H  EGT  +A
Sbjct: 108 ADSDESYMEKSLYQENLEAQVKPCLELSLQSGNSTDFTTDRKSSKK--HIHDKEGTAGKA 165

Query: 295 KIACNTHVAPRMHRLVVMSQVYKQTLAKSSD 325
           K+     +     ++  + Q+ K+      D
Sbjct: 166 KVKSKRRLEKEERKMEKIRQLKKKETKNQED 196


>gi|4502415 Burkitt lymphoma receptor 1 isoform 1 [Homo sapiens]
          Length = 372

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 332 VKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISS 391
           V+ H C  +   L++  ++V +    + IF+LG +G  L       V VI   HR + SS
Sbjct: 33  VENHLCPATEGPLMASFKAVFVPVAYSLIFLLGVIGNVL-------VLVILERHRQTRSS 85

Query: 392 TTGCIFHV 399
           T   +FH+
Sbjct: 86  TETFLFHL 93


>gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens]
          Length = 350

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 463 PCEFYVFIIPFEMEGDTTEIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKDQRKQFQ 522
           P E Y F I   ++    EI G +   Y+K L     +I  +    K   +T   +K+  
Sbjct: 252 PAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKK---MTDYAKKRGW 308

Query: 523 VLVENKFYEWLINTGHRQQLDSLVPPAAGSKQ 554
           VL  N +Y +   +  ++  D+ +P    +KQ
Sbjct: 309 VLGPNNYYSFA--SQQQKPEDTTIPSTELAKQ 338


>gi|153792604 protein prenyltransferase alpha subunit repeat
           containing 1 [Homo sapiens]
          Length = 402

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 11/71 (15%)

Query: 157 EKSNCHNKNWNDYSHQAFVYDHLSDL-LELLLDPKQLT---ASFH-STHSSLVSREAVVA 211
           E +  +  N+N +SH+ +V  HL+ L +++LLD    T   AS H S HS    R+    
Sbjct: 186 EAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQ---- 241

Query: 212 LSFLIEGTISR 222
             FL++  IS+
Sbjct: 242 --FLLKSLISQ 250


>gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Homo
           sapiens]
          Length = 984

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 16/140 (11%)

Query: 52  LYWSTWRHIACGKLQLAKDLAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQ-- 109
           L W +++H     L  A DL +              EE++  S +   C    ++  Q  
Sbjct: 814 LSWRSYKHTNSQFLYFAPDLVF-------------NEEKMHQSAMYELCQGMHQISLQFV 860

Query: 110 RNQLSVDTLQFL-LFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNWND 168
           R QL+ +    + + L +  + K  L++    EE  +   K     +T+  N   ++W  
Sbjct: 861 RLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQR 920

Query: 169 YSHQAFVYDHLSDLLELLLD 188
           +     + D + DL+  LL+
Sbjct: 921 FYQLTKLLDSMHDLVSDLLE 940


>gi|4502359 brain-specific angiogenesis inhibitor 3 [Homo sapiens]
          Length = 1522

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 20/137 (14%)

Query: 151 QSPDLTE-----KSNCHNKNWNDYSHQAFVYDHLSDLLELLLDPKQLTASFHSTHSSLVS 205
           ++PD T+     K +  + + +++S  A+ +DH S   E +   K L    HS      S
Sbjct: 60  ENPDPTKYSIYLKFSKKDLSCSNFSLLAYQFDHFSH--EKI---KDLLRKNHSIMQLCNS 114

Query: 206 REAVVALSFLIEGTISRARKIYPLHELALWQPLHADSG-------FSKISKT-FSFYKLE 257
           + A V L +  +    + R+++P +   L +    D          +K+S + F  + L 
Sbjct: 115 KNAFVFLQY--DKNFIQIRRVFPTNFPGLQKKGEEDQKSFFEFLVLNKVSPSQFGCHVLC 172

Query: 258 TWLRSCLTGNPFGTSAC 274
           TWL SCL      T +C
Sbjct: 173 TWLESCLKSENGRTESC 189


>gi|21361914 semaphorin B [Homo sapiens]
          Length = 761

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 355 KCRNSIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTV 414
           +C N I VL     T HL++C        C  + +  +     ++L  +   ++ G    
Sbjct: 123 QCFNFIRVLVSYNVT-HLYTCGTFAFSPACTFIELQDS-----YLLPISEDKVMEGKGQS 176

Query: 415 TFAPFHTHYPMLEDHMARTGLATVPNYWDNPMVVCR 450
            F P H H  +L D M  +G  T+ N+  +  ++ R
Sbjct: 177 PFDPAHKHTAVLVDGMLYSG--TMNNFLGSEPILMR 210


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,859,074
Number of Sequences: 37866
Number of extensions: 942474
Number of successful extensions: 2058
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2051
Number of HSP's gapped (non-prelim): 17
length of query: 557
length of database: 18,247,518
effective HSP length: 107
effective length of query: 450
effective length of database: 14,195,856
effective search space: 6388135200
effective search space used: 6388135200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.