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Search of human proteins with 196123590
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|196123590 NADH dehydrogenase subunit 6 [Homo sapiens
neanderthalensis]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|196123590 NADH dehydrogenase subunit 6 [Homo sapiens neandert... 350 4e-97
gi|251831118 NADH dehydrogenase subunit 6 [Homo sapiens] 350 5e-97
gi|44680143 solute carrier family 23 (nucleobase transporters), ... 35 0.025
gi|44680145 solute carrier family 23 (nucleobase transporters), ... 35 0.025
gi|44680148 solute carrier family 23 (nucleobase transporters), ... 34 0.073
gi|40316845 solute carrier family 23 (nucleobase transporters), ... 34 0.073
gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member... 31 0.62
gi|239743230 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|239508907 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|23510410 solute carrier family 22 member 1 isoform b [Homo sa... 28 4.0
gi|4506999 solute carrier family 22 member 1 isoform a [Homo sap... 28 4.0
gi|112789566 taste receptor, type 1, member 2 [Homo sapiens] 28 4.0
gi|16306555 potassium channel, subfamily K, member 13 [Homo sapi... 28 4.0
gi|46409657 WD repeat domain 56 [Homo sapiens] 27 6.8
>gi|196123590 NADH dehydrogenase subunit 6 [Homo sapiens
neanderthalensis]
Length = 174
Score = 350 bits (898), Expect = 4e-97
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYL 60
MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYL
Sbjct: 1 MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYL 60
Query: 61 GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNS 120
GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNS
Sbjct: 61 GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNS 120
Query: 121 VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYVVIEIARGN 174
VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYVVIEIARGN
Sbjct: 121 VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYVVIEIARGN 174
>gi|251831118 NADH dehydrogenase subunit 6 [Homo sapiens]
Length = 174
Score = 350 bits (897), Expect = 5e-97
Identities = 173/174 (99%), Positives = 174/174 (100%)
Query: 1 MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYL 60
MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYL
Sbjct: 1 MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYL 60
Query: 61 GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNS 120
GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNS
Sbjct: 61 GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNS 120
Query: 121 VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYVVIEIARGN 174
VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVY+VIEIARGN
Sbjct: 121 VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYIVIEIARGN 174
>gi|44680143 solute carrier family 23 (nucleobase transporters),
member 1 isoform b [Homo sapiens]
Length = 602
Score = 35.4 bits (80), Expect = 0.025
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 9 SVGLVMGFVG-----FSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGM 63
++ LV+G +G F+S P PI GG+ + G++ V + N M L LG
Sbjct: 409 AIMLVLGTIGKFTALFASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFS 468
Query: 64 MVVFGYTTAMAIEEYPEAWGSG---VEVLVSVLVGLAMEVG 101
M FG T +E P A +G V+ ++ VL+ M VG
Sbjct: 469 M-FFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVG 508
>gi|44680145 solute carrier family 23 (nucleobase transporters),
member 1 isoform a [Homo sapiens]
Length = 598
Score = 35.4 bits (80), Expect = 0.025
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 9 SVGLVMGFVG-----FSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGM 63
++ LV+G +G F+S P PI GG+ + G++ V + N M L LG
Sbjct: 405 AIMLVLGTIGKFTALFASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFS 464
Query: 64 MVVFGYTTAMAIEEYPEAWGSG---VEVLVSVLVGLAMEVG 101
M FG T +E P A +G V+ ++ VL+ M VG
Sbjct: 465 M-FFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVG 504
>gi|44680148 solute carrier family 23 (nucleobase transporters),
member 2 [Homo sapiens]
Length = 650
Score = 33.9 bits (76), Expect = 0.073
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 4 ALFLLSVGLVMGFVG-FSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGG 62
A +L++G++ F F+S P P+ G L + G++ V + N + L L G
Sbjct: 463 AALMLALGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVL-G 521
Query: 63 MMVVFGYTTAMAIEEYPEAWG-SGVEVLVSVLVGLAMEVG 101
+ FG + + P G +G++ +++VL+ AM VG
Sbjct: 522 FSIFFGLVLPSYLRQNPLVTGITGIDQVLNVLLTTAMFVG 561
>gi|40316845 solute carrier family 23 (nucleobase transporters),
member 2 [Homo sapiens]
Length = 650
Score = 33.9 bits (76), Expect = 0.073
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 4 ALFLLSVGLVMGFVG-FSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGG 62
A +L++G++ F F+S P P+ G L + G++ V + N + L L G
Sbjct: 463 AALMLALGMIGKFSALFASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVL-G 521
Query: 63 MMVVFGYTTAMAIEEYPEAWG-SGVEVLVSVLVGLAMEVG 101
+ FG + + P G +G++ +++VL+ AM VG
Sbjct: 522 FSIFFGLVLPSYLRQNPLVTGITGIDQVLNVLLTTAMFVG 561
>gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member 11
[Homo sapiens]
Length = 1321
Score = 30.8 bits (68), Expect = 0.62
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 42 IILNFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVG 101
I++ F G++ ++FL Y + F Y + + ++E G+ V++ +SV+VG A+ +G
Sbjct: 320 IVMGFFTGFVWCLIFLCYA----LAFWYGSTLVLDEGEYTPGTLVQIFLSVIVG-ALNLG 374
>gi|239743230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 3.1
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 80 EAWGS----GVEVLVSVLVGLAMEVGLVLWV---------KEYDGVVVVVNFNS------ 120
EAWG+ G E V+VLV + + L L++ + DG+ V+ +
Sbjct: 157 EAWGAPKRKGCEAAVAVLVVVLTLLLLTLFMPKPNAGFEAESVDGLAEVMGATAEVALAR 216
Query: 121 -VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYVVIEIAR 172
V S + G +G++ GAG D G +++ TGW VG V++ + R
Sbjct: 217 PVKSGAVVVGAVAGVVVCLKKGAGKGTDAGGPMLLKTGWK--VGAVVLVVVGR 267
>gi|239508907 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 3.1
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 80 EAWGS----GVEVLVSVLVGLAMEVGLVLWV---------KEYDGVVVVVNFNS------ 120
EAWG+ G E V+VLV + + L L++ + DG+ V+ +
Sbjct: 157 EAWGAPKRKGCEAAVAVLVVVLTLLLLTLFMPKPNAGFEAESVDGLAEVMGATAEVALAR 216
Query: 121 -VGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYVVIEIAR 172
V S + G +G++ GAG D G +++ TGW VG V++ + R
Sbjct: 217 PVKSGAVVVGAVAGVVVCLKKGAGKGTDAGGPMLLKTGWK--VGAVVLVVVGR 267
>gi|23510410 solute carrier family 22 member 1 isoform b [Homo
sapiens]
Length = 506
Score = 28.1 bits (61), Expect = 4.0
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 8 LSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCV--IILNFGGGYMGLMVF-----LIYL 60
L+ G + G +G L L+ + +V V +++ F YM +++F L+
Sbjct: 155 LNAGFLFGSLGVGYFADRFGRKLCLLGTVLVNAVSGVLMAFSPNYMSMLLFRLLQGLVSK 214
Query: 61 GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLV 103
G M GYT E GSG V+++ +A VGLV
Sbjct: 215 GNWMA--GYTLIT------EFVGSGSRRTVAIMYQMAFTVGLV 249
>gi|4506999 solute carrier family 22 member 1 isoform a [Homo
sapiens]
Length = 554
Score = 28.1 bits (61), Expect = 4.0
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 8 LSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCV--IILNFGGGYMGLMVF-----LIYL 60
L+ G + G +G L L+ + +V V +++ F YM +++F L+
Sbjct: 155 LNAGFLFGSLGVGYFADRFGRKLCLLGTVLVNAVSGVLMAFSPNYMSMLLFRLLQGLVSK 214
Query: 61 GGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLV 103
G M GYT E GSG V+++ +A VGLV
Sbjct: 215 GNWMA--GYTLIT------EFVGSGSRRTVAIMYQMAFTVGLV 249
>gi|112789566 taste receptor, type 1, member 2 [Homo sapiens]
Length = 839
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/76 (21%), Positives = 34/76 (44%)
Query: 41 VIILNFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEV 100
+ I++ Y ++F L ++ V G++ A +E P + + +S+ V
Sbjct: 715 ITIVSCNPNYRNSLLFNTSLDLLLSVVGFSFAYMGKELPTNYNEAKFITLSMTFYFTSSV 774
Query: 101 GLVLWVKEYDGVVVVV 116
L ++ Y GV+V +
Sbjct: 775 SLCTFMSAYSGVLVTI 790
>gi|16306555 potassium channel, subfamily K, member 13 [Homo
sapiens]
Length = 408
Score = 28.1 bits (61), Expect = 4.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 10 VGLVMGFVGFS-SKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLI 58
VG V+ +GF + P+ + G + LI G+VGC + F ++ ++ +I
Sbjct: 104 VGTVVSTIGFGMTTPATVGGKIFLIFYGLVGCSSTILFFNLFLERLITII 153
>gi|46409657 WD repeat domain 56 [Homo sapiens]
Length = 777
Score = 27.3 bits (59), Expect = 6.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 78 YPEAWGSGVEVLV-----SVLVGLAMEVGLVLWVKEYDGVVVVVNFNSVGSWMIYEGE 130
Y AWG E ++ +++ VL K +DG+++ V++NSV ++ GE
Sbjct: 151 YSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGE 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.147 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,084,143
Number of Sequences: 37866
Number of extensions: 256151
Number of successful extensions: 653
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 16
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.