Guide to the Human Genome
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Name: ND6 Sequence: fasta or formatted (174aa) NCBI GI: 196123590
Description:

NADH dehydrogenase subunit 6

Homo sapiens neanderthalensis sequence

Other entries for this name:
alt prot [174aa] NADH dehydrogenase subunit 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          8           1
 C cysteine            0.6          1           1
 D aspartate           1.7          3           1
 E glutamate           5.7         10           2
 F phenylalanine       4.6          8           1
 G glycine            16.7         29           3
 H histidine           0.0          0           0
 I isoleucine          6.3         11           2
 K lysine              1.1          2           1
 L leucine            10.9         19           2
 M methionine          5.7         10           2
 N asparagine          2.3          4           1
 P proline             2.3          4           1
 Q glutamine           0.0          0           0
 R arginine            1.7          3           1
 S serine              5.7         10           2
 T threonine           2.3          4           2
 V valine             18.4         32           5
 W tryptophan          2.9          5           1
 Y tyrosine            6.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NADH dehydrogenase subunit 6 
ND6                   1.000   NADH dehydrogenase subunit 6 
SLC23A1               0.031   solute carrier family 23 (nucleobase transporters), ...
SLC23A1               0.031   solute carrier family 23 (nucleobase transporters), ...
SLC23A2               0.028   solute carrier family 23 (nucleobase transporters), ...
SLC23A2               0.028   solute carrier family 23 (nucleobase transporters), ...
ABCB11                0.018   ATP-binding cassette, sub-family B (MDR/TAP), member...
LOC100131972          0.009   PREDICTED: hypothetical protein 
LOC100131972          0.009   PREDICTED: hypothetical protein 
SLC22A1               0.009   solute carrier family 22 member 1 isoform b 
SLC22A1               0.009   solute carrier family 22 member 1 isoform a 
TAS1R2                0.009   taste receptor, type 1, member 2 
KCNK13                0.009   potassium channel, subfamily K, member 13 
IFT80                 0.006   WD repeat domain 56 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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