Search of human proteins with 196123582

Search of human proteins with 196123582

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
neanderthalensis]
         (227 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand...   460   e-130
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]           454   e-128
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ...   120   1e-27
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ...   120   1e-27
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ...    90   1e-18
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ...    90   1e-18
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ...    90   1e-18
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ...    89   3e-18
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ...    89   3e-18
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ...    89   3e-18
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ...    87   1e-17
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ...    87   1e-17
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ...    87   1e-17
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ...    84   1e-16
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ...    84   1e-16
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ...    84   1e-16
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ...    84   1e-16
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ...    84   1e-16
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ...    84   1e-16
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ...    82   4e-16
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ...    82   4e-16
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ...    82   4e-16
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ...    64   1e-10
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ...    64   1e-10
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ...    64   1e-10
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ...    59   3e-09
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]            59   4e-09
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ...    59   4e-09
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]            52   3e-07
gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]              30   1.3  

>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
           neanderthalensis]
          Length = 227

 Score =  460 bits (1183), Expect = e-130
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
           MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE
Sbjct: 1   MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60

Query: 61  METVWTILPAIILVLIALPSLRILYMTDEVNDPSFTIKSIGHQWYWTYEYTDYGGLIFNS 120
           METVWTILPAIILVLIALPSLRILYMTDEVNDPSFTIKSIGHQWYWTYEYTDYGGLIFNS
Sbjct: 61  METVWTILPAIILVLIALPSLRILYMTDEVNDPSFTIKSIGHQWYWTYEYTDYGGLIFNS 120

Query: 121 YMLPPLFLEPGDLRLLDVDNRVVLPVEAPIRMMITSQDVLHSWAVPTLGLKTDAIPGRLN 180
           YMLPPLFLEPGDLRLLDVDNRVVLPVEAPIRMMITSQDVLHSWAVPTLGLKTDAIPGRLN
Sbjct: 121 YMLPPLFLEPGDLRLLDVDNRVVLPVEAPIRMMITSQDVLHSWAVPTLGLKTDAIPGRLN 180

Query: 181 QTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL 227
           QTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL
Sbjct: 181 QTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL 227


>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
          Length = 227

 Score =  454 bits (1168), Expect = e-128
 Identities = 223/227 (98%), Positives = 225/227 (99%)

Query: 1   MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
           MAHAAQVGLQDATSPIMEELI FHDHALMIIFLICFLVLYALFLTLTTKLTNT+ISDAQE
Sbjct: 1   MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQE 60

Query: 61  METVWTILPAIILVLIALPSLRILYMTDEVNDPSFTIKSIGHQWYWTYEYTDYGGLIFNS 120
           METVWTILPAIILVLIALPSLRILYMTDEVNDPS TIKSIGHQWYWTYEYTDYGGLIFNS
Sbjct: 61  METVWTILPAIILVLIALPSLRILYMTDEVNDPSLTIKSIGHQWYWTYEYTDYGGLIFNS 120

Query: 121 YMLPPLFLEPGDLRLLDVDNRVVLPVEAPIRMMITSQDVLHSWAVPTLGLKTDAIPGRLN 180
           YMLPPLFLEPGDLRLLDVDNRVVLP+EAPIRMMITSQDVLHSWAVPTLGLKTDAIPGRLN
Sbjct: 121 YMLPPLFLEPGDLRLLDVDNRVVLPIEAPIRMMITSQDVLHSWAVPTLGLKTDAIPGRLN 180

Query: 181 QTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL 227
           QTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL
Sbjct: 181 QTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL 227


>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score =  120 bits (300), Expect = 1e-27
 Identities = 60/64 (93%), Positives = 63/64 (98%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAHAAQVGLQDATSPI+EELIIFHDHAL+IIFLICFLVLYALFLTLTTKLTNTSISD QE
Sbjct: 1  MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
          sapiens]
          Length = 64

 Score =  120 bits (300), Expect = 1e-27
 Identities = 60/64 (93%), Positives = 63/64 (98%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAHAAQVGLQDATSPI+EELIIFHDHAL+IIFLICFLVLYALFLTLTTKLTNTSISD QE
Sbjct: 1  MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 63

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 45/52 (86%), Positives = 48/52 (92%)

Query: 13 TSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
          TSPI+EELI FHDHAL+IIFLI FLVLY LFLTLTTKL NTSI+DAQEMETV
Sbjct: 5  TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
          sapiens]
          Length = 63

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 45/52 (86%), Positives = 48/52 (92%)

Query: 13 TSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
          TSPI+EELI FHDHAL+IIFLI FLVLY LFLTLTTKL NTSI+DAQEMETV
Sbjct: 5  TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
          sapiens]
          Length = 63

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 45/52 (86%), Positives = 48/52 (92%)

Query: 13 TSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
          TSPI+EELI FHDHAL+IIFLI FLVLY LFLTLTTKL NTSI+DAQEMETV
Sbjct: 5  TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 64

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDATSPI+EEL+ FHDH L+IIFLI  LVLY + L LTTKL +TS +DAQE
Sbjct: 1  MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 VETV 64


>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
          sapiens]
          Length = 64

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDATSPI+EEL+ FHDH L+IIFLI  LVLY + L LTTKL +TS +DAQE
Sbjct: 1  MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 VETV 64


>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
          sapiens]
          Length = 64

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDATSPI+EEL+ FHDH L+IIFLI  LVLY + L LTTKL +TS +DAQE
Sbjct: 1  MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 VETV 64


>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 44/64 (68%), Positives = 52/64 (81%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDATSPI+EEL+ FH HAL+II LI  LVLY + L LTTKLT+TS  DAQE
Sbjct: 1  MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60

Query: 61 METV 64
          ++TV
Sbjct: 61 IKTV 64


>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
          sapiens]
          Length = 64

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 44/64 (68%), Positives = 52/64 (81%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDATSPI+EEL+ FH HAL+II LI  LVLY + L LTTKLT+TS  DAQE
Sbjct: 1  MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60

Query: 61 METV 64
          ++TV
Sbjct: 61 IKTV 64


>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
          sapiens]
          Length = 64

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 44/64 (68%), Positives = 52/64 (81%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDATSPI+EEL+ FH HAL+II LI  LVLY + L LTTKLT+TS  DAQE
Sbjct: 1  MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60

Query: 61 METV 64
          ++TV
Sbjct: 61 IKTV 64


>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 43/64 (67%), Positives = 50/64 (78%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAHA Q+GLQD T  IMEEL+ FHDH L+IIFLI  LVLY + L  TTKLT+TS  DAQE
Sbjct: 1  MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60

Query: 61 METV 64
          ++TV
Sbjct: 61 IQTV 64


>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 43/64 (67%), Positives = 51/64 (79%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MA+  Q+GLQD TSPI+EEL+ FHDHAL+IIFLI  LVL  + L LTTKLT+T   DAQE
Sbjct: 1  MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 43/64 (67%), Positives = 50/64 (78%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAHA Q+GLQD T  IMEEL+ FHDH L+IIFLI  LVLY + L  TTKLT+TS  DAQE
Sbjct: 1  MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60

Query: 61 METV 64
          ++TV
Sbjct: 61 IQTV 64


>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
          sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 43/64 (67%), Positives = 51/64 (79%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MA+  Q+GLQD TSPI+EEL+ FHDHAL+IIFLI  LVL  + L LTTKLT+T   DAQE
Sbjct: 1  MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
          sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 43/64 (67%), Positives = 50/64 (78%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAHA Q+GLQD T  IMEEL+ FHDH L+IIFLI  LVLY + L  TTKLT+TS  DAQE
Sbjct: 1  MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60

Query: 61 METV 64
          ++TV
Sbjct: 61 IQTV 64


>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
          sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 43/64 (67%), Positives = 51/64 (79%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MA+  Q+GLQD TSPI+EEL+ FHDHAL+IIFLI  LVL  + L LTTKLT+T   DAQE
Sbjct: 1  MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 64

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDA SPI+EEL+ FHDHAL+IIFLI  LVLY + L L T LT+ S   AQE
Sbjct: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
          sapiens]
          Length = 64

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDA SPI+EEL+ FHDHAL+IIFLI  LVLY + L L T LT+ S   AQE
Sbjct: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
          sapiens]
          Length = 64

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
          MAH  Q+GLQDA SPI+EEL+ FHDHAL+IIFLI  LVLY + L L T LT+ S   AQE
Sbjct: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60

Query: 61 METV 64
          +ETV
Sbjct: 61 IETV 64


>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
          sapiens]
          Length = 53

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query: 15 PIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
          P   +L+ FHDHAL+IIFLI  LVLY + L LTTKLT+TS   AQE+ETV
Sbjct: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
          sapiens]
          Length = 53

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query: 15 PIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
          P   +L+ FHDHAL+IIFLI  LVLY + L LTTKLT+TS   AQE+ETV
Sbjct: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
          sapiens]
          Length = 53

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query: 15 PIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
          P   +L+ FHDHAL+IIFLI  LVLY + L LTTKLT+TS   AQE+ETV
Sbjct: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
           sapiens]
          Length = 415

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 29/48 (60%), Positives = 35/48 (72%)

Query: 17  MEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
           + + I FHDH L+I+FLI  LVLY + L LT KLTN S  DAQE+ETV
Sbjct: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415


>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 29/48 (60%), Positives = 35/48 (72%)

Query: 17  MEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
           + + I FHDH L+I+FLI  LVLY + L LT KLTN S  DAQE+ETV
Sbjct: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245


>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
           sapiens]
          Length = 433

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 29/48 (60%), Positives = 35/48 (72%)

Query: 17  MEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
           + + I FHDH L+I+FLI  LVLY + L LT KLTN S  DAQE+ETV
Sbjct: 386 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433


>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 70

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 3/48 (6%)

Query: 19 ELIIFHDHALMIIFLICFLVLY--ALFLT-LTTKLTNTSISDAQEMET 63
          EL+ FH H LMIIFLI  LV Y  +L LT LTTKLT+TS  D QE+ET
Sbjct: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69


>gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]
          Length = 802

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 28  LMIIFLICFLVLYALFLTLTTKLTN-TSISDAQEMETVWTILPAIILVLIALPSLRILYM 86
           L I+ L C      +F    T L   T +  AQE+E +   LP  +LV  A    ++LY+
Sbjct: 40  LHIMSLACIYTRKGVFFAGGTPLAGPTGLLSAQELEDIVAALPGFLLVFTA--EGKLLYL 97

Query: 87  TDEVND 92
           ++ V++
Sbjct: 98  SESVSE 103


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,185,812
Number of Sequences: 37866
Number of extensions: 327412
Number of successful extensions: 823
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 34
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.