Search of human proteins with 194473714

Search of human proteins with 194473714

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194473714 latexin [Homo sapiens]
         (222 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194473714 latexin [Homo sapiens]                                   462   e-130
gi|46255043 retinoic acid receptor responder (tazarotene induced...   124   8e-29
gi|46255041 retinoic acid receptor responder (tazarotene induced...    79   3e-15
gi|28269672 serologically defined colon cancer antigen 8 [Homo s...    28   4.8  
gi|171184408 solute carrier family 6 (neurotransmitter transport...    28   6.2  
gi|171184406 solute carrier family 6 (neurotransmitter transport...    28   6.2  
gi|171184404 solute carrier family 6 (neurotransmitter transport...    28   6.2  
gi|40018614 DRE1 protein [Homo sapiens]                                28   6.2  
gi|7657587 solute carrier family 6 (neurotransmitter transporter...    28   8.2  
gi|148833504 interleukin 16 isoform 2 [Homo sapiens]                   28   8.2  
gi|171906569 seipin isoform 1 [Homo sapiens]                           28   8.2  
gi|195230753 seipin isoform 1 [Homo sapiens]                           28   8.2  
gi|40068505 seipin isoform 2 [Homo sapiens]                            28   8.2  

>gi|194473714 latexin [Homo sapiens]
          Length = 222

 Score =  462 bits (1189), Expect = e-130
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MEIPPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYHLKFAVEE 60
           MEIPPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYHLKFAVEE
Sbjct: 1   MEIPPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYHLKFAVEE 60

Query: 61  IIQKQVKVNCTAEVLYPSTGQETAPEVNFTFEGETGKNPDEEDNTFYQRLKSMKEPLEAQ 120
           IIQKQVKVNCTAEVLYPSTGQETAPEVNFTFEGETGKNPDEEDNTFYQRLKSMKEPLEAQ
Sbjct: 61  IIQKQVKVNCTAEVLYPSTGQETAPEVNFTFEGETGKNPDEEDNTFYQRLKSMKEPLEAQ 120

Query: 121 NIPDNFGNVSPEMTLVLHLAWVACGYIIWQNSTEDTWYKMVKIQTVKQVQRNDDFIELDY 180
           NIPDNFGNVSPEMTLVLHLAWVACGYIIWQNSTEDTWYKMVKIQTVKQVQRNDDFIELDY
Sbjct: 121 NIPDNFGNVSPEMTLVLHLAWVACGYIIWQNSTEDTWYKMVKIQTVKQVQRNDDFIELDY 180

Query: 181 TILLHNIASQEIIPWQMQVLWHPQYGTKVKHNSRLPKEVQLE 222
           TILLHNIASQEIIPWQMQVLWHPQYGTKVKHNSRLPKEVQLE
Sbjct: 181 TILLHNIASQEIIPWQMQVLWHPQYGTKVKHNSRLPKEVQLE 222


>gi|46255043 retinoic acid receptor responder (tazarotene induced) 1
           isoform 1 [Homo sapiens]
          Length = 294

 Score =  124 bits (310), Expect = 8e-29
 Identities = 64/209 (30%), Positives = 120/209 (57%), Gaps = 10/209 (4%)

Query: 12  RAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYHLKFAVEEIIQKQVKVN-- 69
           +AA  A ++ N++ G+P  +  + +V++      P  G K H+ F+ E    + +     
Sbjct: 61  QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120

Query: 70  -----CTAEVLYPSTGQETAPEVNFTFEGETGKNP-DEEDNTFYQRLKSMKEPLEAQNIP 123
                C+A V + +  Q+  P +N T      K    +ED   Y+++K +K PLE  +IP
Sbjct: 121 GRLGKCSARVFFKN--QKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIP 178

Query: 124 DNFGNVSPEMTLVLHLAWVACGYIIWQNSTEDTWYKMVKIQTVKQVQRNDDFIELDYTIL 183
           DN G++ P + L+  LA++   Y++W+ +T+ + Y + ++ +V+Q + NDD I+ DYT+L
Sbjct: 179 DNHGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQWKTNDDTIDFDYTVL 238

Query: 184 LHNIASQEIIPWQMQVLWHPQYGTKVKHN 212
           LH +++QEIIP ++ ++W+P    KVK++
Sbjct: 239 LHELSTQEIIPCRIHLVWYPGKPLKVKYH 267


>gi|46255041 retinoic acid receptor responder (tazarotene induced) 1
           isoform 2 [Homo sapiens]
          Length = 228

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 44/165 (26%), Positives = 87/165 (52%), Gaps = 10/165 (6%)

Query: 12  RAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYHLKFAVEEIIQKQVKVN-- 69
           +AA  A ++ N++ G+P  +  + +V++      P  G K H+ F+ E    + +     
Sbjct: 61  QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120

Query: 70  -----CTAEVLYPSTGQETAPEVNFTFEGETGKNP-DEEDNTFYQRLKSMKEPLEAQNIP 123
                C+A V + +  Q+  P +N T      K    +ED   Y+++K +K PLE  +IP
Sbjct: 121 GRLGKCSARVFFKN--QKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIP 178

Query: 124 DNFGNVSPEMTLVLHLAWVACGYIIWQNSTEDTWYKMVKIQTVKQ 168
           DN G++ P + L+  LA++   Y++W+ +T+ + Y + ++ +V+Q
Sbjct: 179 DNHGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQ 223


>gi|28269672 serologically defined colon cancer antigen 8 [Homo
           sapiens]
          Length = 713

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 43  EDIPGRGHKYHLKFAVEEIIQKQVKVNCTAEVLYPSTGQETAPEVNFTF--------EGE 94
           E++ G  +K  +     E +Q+Q+K     E L   T  + +  ++ ++         GE
Sbjct: 141 EELSGMKNKIQVVVLENEGLQQQLKSQRQEETLREQTLLDASGNMHNSWITTGEDSGVGE 200

Query: 95  TGKNPDEEDNTFYQRLKSMKEPLEAQNI 122
           T K P   DN  + +  S  E LE + +
Sbjct: 201 TSKRPFSHDNADFGKAASAGEQLELEKL 228


>gi|171184408 solute carrier family 6 (neurotransmitter transporter,
           betaine/GABA), member 12 [Homo sapiens]
          Length = 614

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 125 NFGNVSPEMTLVLHLAWVACGYIIWQ 150
           + G++  E+ L L LAWV C + IW+
Sbjct: 205 DLGSLRWELALCLLLAWVICYFCIWK 230


>gi|171184406 solute carrier family 6 (neurotransmitter transporter,
           betaine/GABA), member 12 [Homo sapiens]
          Length = 614

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 125 NFGNVSPEMTLVLHLAWVACGYIIWQ 150
           + G++  E+ L L LAWV C + IW+
Sbjct: 205 DLGSLRWELALCLLLAWVICYFCIWK 230


>gi|171184404 solute carrier family 6 (neurotransmitter transporter,
           betaine/GABA), member 12 [Homo sapiens]
          Length = 614

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 125 NFGNVSPEMTLVLHLAWVACGYIIWQ 150
           + G++  E+ L L LAWV C + IW+
Sbjct: 205 DLGSLRWELALCLLLAWVICYFCIWK 230


>gi|40018614 DRE1 protein [Homo sapiens]
          Length = 600

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 159 KMVKIQTVKQVQRNDDFIELDYTILLHNIASQEII 193
           K   +QT + V ++++F+ELD   L+  I S E++
Sbjct: 188 KNFALQTFEDVSQHEEFLELDKDELIDYICSDELV 222


>gi|7657587 solute carrier family 6 (neurotransmitter transporter,
           GABA), member 11 [Homo sapiens]
          Length = 632

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 124 DNFGNVSPEMTLVLHLAWVACGYIIWQNS 152
           ++ GN+  E+ L L  AW  C + IW+ +
Sbjct: 219 EHIGNLRWELALCLLAAWTICYFCIWKGT 247


>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
          Length = 1332

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 2   EIPPTNYP----ASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYHLKFA 57
           E  P++ P    AS AA + Q   N +  T  R+F +++   AS  + PG+       F 
Sbjct: 68  EAGPSSVPDLALASEAAQL-QAAGNDRGKTCRRIFFMKESSTASSREKPGKLEAQSSNFL 126

Query: 58  VEEIIQKQVKVN-------CTAEVLYPSTGQETAP 85
             +   ++ + N       CT E+ +P T +  AP
Sbjct: 127 FPKACHQRARSNSTSVNPYCTREIDFPMTKKSAAP 161


>gi|171906569 seipin isoform 1 [Homo sapiens]
          Length = 462

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 50  HKYHLKFAVE--EIIQKQVKVNCTAEVLYPSTGQETAPEVNFTFEGETGKNPDEEDNTFY 107
           H++ L+  +   +  +K+V+   +A    P   +E+ P+ + T +GE+ ++P   +    
Sbjct: 330 HRFSLQVNIRKRDNSRKEVQRRISAHQPGPEGQEESTPQSDVTEDGESPEDPSGTEGQLS 389

Query: 108 QRLKSMKEPLEAQ 120
           +  K  ++PL  +
Sbjct: 390 EEEKPDQQPLSGE 402


>gi|195230753 seipin isoform 1 [Homo sapiens]
          Length = 462

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 50  HKYHLKFAVE--EIIQKQVKVNCTAEVLYPSTGQETAPEVNFTFEGETGKNPDEEDNTFY 107
           H++ L+  +   +  +K+V+   +A    P   +E+ P+ + T +GE+ ++P   +    
Sbjct: 330 HRFSLQVNIRKRDNSRKEVQRRISAHQPGPEGQEESTPQSDVTEDGESPEDPSGTEGQLS 389

Query: 108 QRLKSMKEPLEAQ 120
           +  K  ++PL  +
Sbjct: 390 EEEKPDQQPLSGE 402


>gi|40068505 seipin isoform 2 [Homo sapiens]
          Length = 398

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 50  HKYHLKFAVE--EIIQKQVKVNCTAEVLYPSTGQETAPEVNFTFEGETGKNPDEEDNTFY 107
           H++ L+  +   +  +K+V+   +A    P   +E+ P+ + T +GE+ ++P   +    
Sbjct: 266 HRFSLQVNIRKRDNSRKEVQRRISAHQPGPEGQEESTPQSDVTEDGESPEDPSGTEGQLS 325

Query: 108 QRLKSMKEPLEAQ 120
           +  K  ++PL  +
Sbjct: 326 EEEKPDQQPLSGE 338


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,804,159
Number of Sequences: 37866
Number of extensions: 370113
Number of successful extensions: 841
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 13
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.