Guide to the Human Genome
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Search of human proteins with 194473681

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo
sapiens]
         (297 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|61835204 mercaptopyruvate sulfurtransferase isoform 2 [Homo s...   620   e-178
gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo ...   620   e-178
gi|194473668 mercaptopyruvate sulfurtransferase isoform 1 [Homo ...   620   e-178
gi|17402865 thiosulfate sulfurtransferase [Homo sapiens]              377   e-105
gi|163965377 putative thiosulfate sulfurtransferase KAT isoform ...    36   0.036
gi|47716687 zinc finger protein 167 isoform 1 [Homo sapiens]           33   0.39 
gi|47716685 zinc finger protein 167 isoform 2 [Homo sapiens]           33   0.39 
gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]       32   0.88 
gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]       32   0.88 
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]       31   1.1  
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]       31   1.1  
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]       31   1.1  
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]       31   1.1  
gi|163965371 putative thiosulfate sulfurtransferase KAT isoform ...    31   1.1  
gi|7661862 protein phosphatase 1F [Homo sapiens]                       30   2.0  
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]            30   2.6  
gi|109638751 ubiquitin specific protease 6 [Homo sapiens]              29   4.4  
gi|85797660 limkain b1 [Homo sapiens]                                  29   4.4  
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]           29   5.7  
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]           29   5.7  
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]           29   5.7  
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]           29   5.7  
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom...    29   5.7  
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom...    29   5.7  
gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo s...    28   9.7  

>gi|61835204 mercaptopyruvate sulfurtransferase isoform 2 [Homo
           sapiens]
          Length = 297

 Score =  620 bits (1598), Expect = e-178
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
           MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 1   MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60

Query: 61  DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
           DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 61  DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120

Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
           GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180

Query: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
           VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240

Query: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
           SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297


>gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo
           sapiens]
          Length = 297

 Score =  620 bits (1598), Expect = e-178
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
           MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 1   MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60

Query: 61  DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
           DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 61  DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120

Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
           GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180

Query: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
           VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240

Query: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
           SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297


>gi|194473668 mercaptopyruvate sulfurtransferase isoform 1 [Homo
           sapiens]
          Length = 317

 Score =  620 bits (1598), Expect = e-178
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
           MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 21  MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 80

Query: 61  DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
           DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 81  DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 140

Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
           GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 141 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 200

Query: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
           VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 201 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 260

Query: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
           SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 261 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 317


>gi|17402865 thiosulfate sulfurtransferase [Homo sapiens]
          Length = 297

 Score =  377 bits (969), Expect = e-105
 Identities = 176/296 (59%), Positives = 224/296 (75%), Gaps = 2/296 (0%)

Query: 1   MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
           M    L RALVS +W+AE++R  + G  L++LDASWY P   R+AR+E+ ERH+PGA+FF
Sbjct: 1   MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGT-REARKEYLERHVPGASFF 59

Query: 61  DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
           DI++C D  SPY+ MLP    FAEY GRLG+   THVV+YD    G + APRVWWMFR F
Sbjct: 60  DIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVF 119

Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
           GH  VS+L+GG R+WL++  P++S  S+P PA F+A LD + +KTYE + ENLES+RFQ+
Sbjct: 120 GHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQL 179

Query: 181 VDSRATGRFRGTEPEP-RDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD 239
           VDSR+ GRF GTEPEP   G++ GHI G VN+PF DFL+++G EK PEE+R LFQ KKVD
Sbjct: 180 VDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVD 239

Query: 240 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGK 295
           LS+PL+ATC  GVTACHVAL AYLCGKPDV +YDGSW EW+ RA PE  +S+G+ +
Sbjct: 240 LSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSE 295


>gi|163965377 putative thiosulfate sulfurtransferase KAT isoform 1
           [Homo sapiens]
          Length = 115

 Score = 36.2 bits (82), Expect = 0.036
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 185 ATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL-SKP 243
           A+GR R  +   R+    G IPG +NIP ++   +  L+  P   + L+  +K  L  + 
Sbjct: 17  ASGRARLFDVRSREEAAAGTIPGALNIPVSEL--ESALQMEPAAFQALYSAEKPKLEDEH 74

Query: 244 LVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW 279
           LV  C  G         A   G      Y G++ EW
Sbjct: 75  LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREW 110


>gi|47716687 zinc finger protein 167 isoform 1 [Homo sapiens]
          Length = 754

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 125 VSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSR 184
           +S+L G LR W++ + P S  ++     +F+  L  +     E++    + +     ++ 
Sbjct: 103 LSILPGELRTWVQLHHPESGEEAVAVVEDFQRHLSGS-----EEVSAPAQKQEMHFEETT 157

Query: 185 ATGRFRGTEPE--------PRDGIEPGHIPGTVNIPFTDF 216
           A G  + + P         P   +EP + PGT ++P  DF
Sbjct: 158 ALGTTKESPPTSPLSGGSAPGAHLEPPYDPGTHHLPSGDF 197


>gi|47716685 zinc finger protein 167 isoform 2 [Homo sapiens]
          Length = 276

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 125 VSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSR 184
           +S+L G LR W++ + P S  ++     +F+  L  +     E++    + +     ++ 
Sbjct: 103 LSILPGELRTWVQLHHPESGEEAVAVVEDFQRHLSGS-----EEVSAPAQKQEMHFEETT 157

Query: 185 ATGRFRGTEPE--------PRDGIEPGHIPGTVNIPFTDF 216
           A G  + + P         P   +EP + PGT ++P  DF
Sbjct: 158 ALGTTKESPPTSPLSGGSAPGAHLEPPYDPGTHHLPSGDF 197


>gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]
          Length = 2296

 Score = 31.6 bits (70), Expect = 0.88
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 143  SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
            S   S+P    +R ++D        D+++N  S ++    S  TG +R T   P++G  P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582

Query: 203  GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTA 254
            G        P    ++ EGL+ + E +  ++ +     S+PLV T  + + A
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTTIPA 1634


>gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]
          Length = 2176

 Score = 31.6 bits (70), Expect = 0.88
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 143  SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
            S   S+P    +R ++D        D+++N  S ++    S  TG +R T   P++G  P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582

Query: 203  GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTA 254
            G        P    ++ EGL+ + E +  ++ +     S+PLV T  + + A
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTTIPA 1634


>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
          Length = 2355

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 143  SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
            S   S+P    +R ++D        D+++N  S ++    S  TG +R T   P++G  P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582

Query: 203  GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
            G        P    ++ EGL+ + E +  ++ +     S+PLV T  + +
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1632


>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
          Length = 2477

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 143  SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
            S   S+P    +R ++D        D+++N  S ++    S  TG +R T   P++G  P
Sbjct: 1618 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1673

Query: 203  GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
            G        P    ++ EGL+ + E +  ++ +     S+PLV T  + +
Sbjct: 1674 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1723


>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
          Length = 2330

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 143  SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
            S   S+P    +R ++D        D+++N  S ++    S  TG +R T   P++G  P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582

Query: 203  GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
            G        P    ++ EGL+ + E +  ++ +     S+PLV T  + +
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1632


>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
          Length = 2421

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 143  SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
            S   S+P    +R ++D        D+++N  S ++    S  TG +R T   P++G  P
Sbjct: 1618 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1673

Query: 203  GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
            G        P    ++ EGL+ + E +  ++ +     S+PLV T  + +
Sbjct: 1674 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1723


>gi|163965371 putative thiosulfate sulfurtransferase KAT isoform 3
           [Homo sapiens]
          Length = 109

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 185 ATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL-SKP 243
           A+GR R  +   R+    G IPG +NIP ++   +  L+  P   + L+  +K  L  + 
Sbjct: 17  ASGRARLFDVRSREEAAAGTIPGALNIPVSEL--ESALQMEPAAFQALYSAEKPKLEDEH 74

Query: 244 LVATCGSG 251
           LV  C  G
Sbjct: 75  LVFFCQMG 82


>gi|7661862 protein phosphatase 1F [Homo sapiens]
          Length = 454

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 11  VSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTS 70
           V+ QW  +   A RA Q   L+          R+ RR+ E+RH+   +F  +   SD  +
Sbjct: 136 VAGQWQKQVPLAARASQRQWLVSIHAI-----RNTRRKMEDRHVSLPSFNQLFGLSDPVN 190

Query: 71  PYDHMLPGAEHFAEYAGRLGVGAATHVVIY 100
                     +FA + G  GV AA +  ++
Sbjct: 191 --------RAYFAVFDGHGGVDAARYAAVH 212


>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
          Length = 215

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 48  EFEERHIPGAAFFDIDQCSDRTSPYDHM--LPGAEHFAEYAGRLGVGAATHVVIYDASDQ 105
           E++E  I GAAF     C D T+    +    G E +   A     GA   +V+YD ++Q
Sbjct: 47  EYQESTI-GAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQ 105

Query: 106 GLYSAPRVW 114
             ++  + W
Sbjct: 106 ETFARAKTW 114


>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
          Length = 1406

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 191 GTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLF-QEKKVDL-SKPLVATC 248
           GTE    +G+  GH+P   + PFT ++     +    E+  L  QE +  L   PL+  C
Sbjct: 848 GTEKNFTNGMVNGHMPSLPDSPFTGYIIAVHRKMMRTELYFLSPQENRPSLFGMPLIVPC 907

Query: 249 GSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARP 285
                  H         K D  +YD  W++    ARP
Sbjct: 908 -----TVHTR-------KKD--LYDAVWIQVSWLARP 930


>gi|85797660 limkain b1 [Homo sapiens]
          Length = 1742

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 12/152 (7%)

Query: 100  YDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLD 159
            + + ++ L + P+V W+ +  GH  + +L   ++  L  +L LS    +  P+E    L+
Sbjct: 1530 HSSVEELLGAIPQVVWI-KGHGHKRIVVLKNDMKSRL-SSLSLSPANHENQPSEGERILE 1587

Query: 160  PAFIKTYEDIK--------ENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNI 211
                 T  ++K         + E    ++ D           P P     P   P  V +
Sbjct: 1588 VPESHTASELKLGADGSGPSHTEQELLRLTDDSPVDLL--CAPVPSCLPSPQLRPDPVIL 1645

Query: 212  PFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKP 243
               D +  E   + P EI  L QE+K+++  P
Sbjct: 1646 QSADLIQFEERPQEPSEIMILNQEEKMEIPIP 1677


>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
          Length = 1011

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
           KT + +K + E         + T +F  + P P   +  GHIP  + +P
Sbjct: 721 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 769


>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
          Length = 1073

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
           KT + +K + E         + T +F  + P P   +  GHIP  + +P
Sbjct: 783 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 831


>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
          Length = 1017

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
           KT + +K + E         + T +F  + P P   +  GHIP  + +P
Sbjct: 727 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 775


>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
          Length = 998

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
           KT + +K + E         + T +F  + P P   +  GHIP  + +P
Sbjct: 708 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 756


>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
           sapiens]
          Length = 598

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 119 AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEF 154
           +FGH + S    GLR W  Q LP +SG  QP PA F
Sbjct: 157 SFGHFSPSQTYEGLRAWTEQ-LPKASGPPQP-PAFF 190


>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
           sapiens]
          Length = 598

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 119 AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEF 154
           +FGH + S    GLR W  Q LP +SG  QP PA F
Sbjct: 157 SFGHFSPSQTYEGLRAWTEQ-LPKASGPPQP-PAFF 190


>gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo
           sapiens]
          Length = 1050

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 43/149 (28%), Positives = 52/149 (34%), Gaps = 33/149 (22%)

Query: 146 KSQPA-PAEFRAQLDP-AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPG 203
           KS PA P    AQ  P A +KT E I  N +      V       F G EP   D I  G
Sbjct: 542 KSPPADPPRVLAQRRPLAVLKTSESITSNED------VSPDVCDEFTGIEPLSEDAIITG 595

Query: 204 HIPGT-----------------VNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVA 246
               T                 V+ PF + +S + L   PE    L  E+ +D     V 
Sbjct: 596 FRNVTICPNPEDTCDFARAARFVSTPFHEIMSLKDLPSDPE---RLLPEEDLD-----VK 647

Query: 247 TCGSGVTACHVALGAYLCGKPDVPIYDGS 275
           T     TAC       L  K   PI + S
Sbjct: 648 TSEDQQTACGTIYSQTLSIKKLSPIIEDS 676


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,147,339
Number of Sequences: 37866
Number of extensions: 636347
Number of successful extensions: 1448
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 26
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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