Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 190885491
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190885491 zinc finger, SWIM-type containing 4 [Homo sapiens]
(989 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190885491 zinc finger, SWIM-type containing 4 [Homo sapiens] 2003 0.0
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 830 0.0
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 781 0.0
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 224 2e-58
gi|229577000 ecotropic viral integration site 5-like isoform 1 [... 33 1.0
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H... 33 1.0
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 32 2.9
gi|195972890 unc-84 homolog A isoform a [Homo sapiens] 32 2.9
gi|110227866 unc-84 homolog A isoform b [Homo sapiens] 32 2.9
gi|167614498 killer cell lectin-like receptor subfamily D, membe... 32 3.8
gi|4504889 killer cell lectin-like receptor subfamily D, member ... 32 3.8
gi|153085395 histone deacetylase 4 [Homo sapiens] 31 5.0
gi|122937211 KIAA0368 protein [Homo sapiens] 31 6.6
gi|27886566 mucosa associated lymphoid tissue lymphoma transloca... 30 8.6
gi|5803078 mucosa associated lymphoid tissue lymphoma translocat... 30 8.6
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 30 8.6
gi|7669499 killer cell lectin-like receptor subfamily D, member ... 30 8.6
>gi|190885491 zinc finger, SWIM-type containing 4 [Homo sapiens]
Length = 989
Score = 2003 bits (5190), Expect = 0.0
Identities = 989/989 (100%), Positives = 989/989 (100%)
Query: 1 MEPPAAKRSRGCPAGPEERDAGAGAARGRGRPEALLDLSAKRVAESWAFEQVEERFSRVP 60
MEPPAAKRSRGCPAGPEERDAGAGAARGRGRPEALLDLSAKRVAESWAFEQVEERFSRVP
Sbjct: 1 MEPPAAKRSRGCPAGPEERDAGAGAARGRGRPEALLDLSAKRVAESWAFEQVEERFSRVP 60
Query: 61 EPVQKRIVFWSFPRSEREICMYSSLGYPPPEGEHDARVPFTRGLHLLQSGAVDRVLQVGF 120
EPVQKRIVFWSFPRSEREICMYSSLGYPPPEGEHDARVPFTRGLHLLQSGAVDRVLQVGF
Sbjct: 61 EPVQKRIVFWSFPRSEREICMYSSLGYPPPEGEHDARVPFTRGLHLLQSGAVDRVLQVGF 120
Query: 121 HLSGNIREPGSPGEPERLYHVSISFDRCKITSVSCGCDNRDLFYCAHVVALSLYRIRHAH 180
HLSGNIREPGSPGEPERLYHVSISFDRCKITSVSCGCDNRDLFYCAHVVALSLYRIRHAH
Sbjct: 121 HLSGNIREPGSPGEPERLYHVSISFDRCKITSVSCGCDNRDLFYCAHVVALSLYRIRHAH 180
Query: 181 QVELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGSEINLVNGAP 240
QVELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGSEINLVNGAP
Sbjct: 181 QVELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGSEINLVNGAP 240
Query: 241 DPTAGAGIEDANCWHLDEEQIQEQVKQLLSNGGYYGASQQLRSMFSKVREMLRMRDSNGA 300
DPTAGAGIEDANCWHLDEEQIQEQVKQLLSNGGYYGASQQLRSMFSKVREMLRMRDSNGA
Sbjct: 241 DPTAGAGIEDANCWHLDEEQIQEQVKQLLSNGGYYGASQQLRSMFSKVREMLRMRDSNGA 300
Query: 301 RMLILMTEQFLQDTRLALWRQQGAGMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQ 360
RMLILMTEQFLQDTRLALWRQQGAGMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQ
Sbjct: 301 RMLILMTEQFLQDTRLALWRQQGAGMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQ 360
Query: 361 LLSRWDKLDVCPLEEGNYSFDGPSLQPTMAPAPELLQKGSTCITNTEGWVGHPLDPIGCL 420
LLSRWDKLDVCPLEEGNYSFDGPSLQPTMAPAPELLQKGSTCITNTEGWVGHPLDPIGCL
Sbjct: 361 LLSRWDKLDVCPLEEGNYSFDGPSLQPTMAPAPELLQKGSTCITNTEGWVGHPLDPIGCL 420
Query: 421 CRALLEACRLEEETLTLYPDSGPEKRKVAYQHVPVPGSPGESYLVLALEVALLGLGQQRA 480
CRALLEACRLEEETLTLYPDSGPEKRKVAYQHVPVPGSPGESYLVLALEVALLGLGQQRA
Sbjct: 421 CRALLEACRLEEETLTLYPDSGPEKRKVAYQHVPVPGSPGESYLVLALEVALLGLGQQRA 480
Query: 481 LPEGLYAQDKVVRNEEQLLALLEEVELDERLVQVLRKQAGLLLEGGPFSGFGEVLFRESV 540
LPEGLYAQDKVVRNEEQLLALLEEVELDERLVQVLRKQAGLLLEGGPFSGFGEVLFRESV
Sbjct: 481 LPEGLYAQDKVVRNEEQLLALLEEVELDERLVQVLRKQAGLLLEGGPFSGFGEVLFRESV 540
Query: 541 PMHTCARYLFTALLPHDPDLAYRLALRAMRLPILETAFPAGEPHPSPLDSIMSNRFPRWF 600
PMHTCARYLFTALLPHDPDLAYRLALRAMRLPILETAFPAGEPHPSPLDSIMSNRFPRWF
Sbjct: 541 PMHTCARYLFTALLPHDPDLAYRLALRAMRLPILETAFPAGEPHPSPLDSIMSNRFPRWF 600
Query: 601 ILGHLETRQCELASTMLTAAKGDPKWLHTVLGSIQQNIHSPALLFKLAQDACKTATPVSA 660
ILGHLETRQCELASTMLTAAKGDPKWLHTVLGSIQQNIHSPALLFKLAQDACKTATPVSA
Sbjct: 601 ILGHLETRQCELASTMLTAAKGDPKWLHTVLGSIQQNIHSPALLFKLAQDACKTATPVSA 660
Query: 661 PPDTTLLGIALELGLQVMRMTLNVMTWRRREMVRWLVSCATEIGPQALMNIMQNWYSLFT 720
PPDTTLLGIALELGLQVMRMTLNVMTWRRREMVRWLVSCATEIGPQALMNIMQNWYSLFT
Sbjct: 661 PPDTTLLGIALELGLQVMRMTLNVMTWRRREMVRWLVSCATEIGPQALMNIMQNWYSLFT 720
Query: 721 PVEAATIVAVTGTTHATLLRLQLDTSRREELWACARTLALQCAMKDPQNCALPALTLCEK 780
PVEAATIVAVTGTTHATLLRLQLDTSRREELWACARTLALQCAMKDPQNCALPALTLCEK
Sbjct: 721 PVEAATIVAVTGTTHATLLRLQLDTSRREELWACARTLALQCAMKDPQNCALPALTLCEK 780
Query: 781 NHSAFEAAYQIVLDAAAGGLGHAHLFTVARYMEHRGLPLRAYKLATLALAQLSIAFNQDS 840
NHSAFEAAYQIVLDAAAGGLGHAHLFTVARYMEHRGLPLRAYKLATLALAQLSIAFNQDS
Sbjct: 781 NHSAFEAAYQIVLDAAAGGLGHAHLFTVARYMEHRGLPLRAYKLATLALAQLSIAFNQDS 840
Query: 841 HPAVNDVLWACSLSHSLGRHELSAIVPLIIRSIHCAPMLSDILRRWTLSAPGLGPLGARR 900
HPAVNDVLWACSLSHSLGRHELSAIVPLIIRSIHCAPMLSDILRRWTLSAPGLGPLGARR
Sbjct: 841 HPAVNDVLWACSLSHSLGRHELSAIVPLIIRSIHCAPMLSDILRRWTLSAPGLGPLGARR 900
Query: 901 AAKPLGADRAPLCQLLDAAVTAYITTSHSRLTHISPRHYGDFIEFLGKARETFLLAPDGH 960
AAKPLGADRAPLCQLLDAAVTAYITTSHSRLTHISPRHYGDFIEFLGKARETFLLAPDGH
Sbjct: 901 AAKPLGADRAPLCQLLDAAVTAYITTSHSRLTHISPRHYGDFIEFLGKARETFLLAPDGH 960
Query: 961 LQFSQFLENLKQTYKGKKKLMLLVRERFG 989
LQFSQFLENLKQTYKGKKKLMLLVRERFG
Sbjct: 961 LQFSQFLENLKQTYKGKKKLMLLVRERFG 989
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 830 bits (2144), Expect = 0.0
Identities = 413/601 (68%), Positives = 501/601 (83%), Gaps = 6/601 (0%)
Query: 394 ELLQKGSTCITNTEGWVGHPLDPIGCLCRALLEACRLEEETLTLYPDSGPEKRKVAYQHV 453
ELLQ+G+T ITN EGWVGHPLDPI CL L EACRL ++ D E R YQHV
Sbjct: 586 ELLQRGTTTITNLEGWVGHPLDPIDCLFLTLTEACRLNDDGYLEMSDMN-ESRPPVYQHV 644
Query: 454 PVP-GSPG--ESYLVLALEVALLGLGQQRALPEGLYAQDKVVRNEEQLLALLEEVELDER 510
PV GSP ESYL LALEVAL+GLGQQR +PEGLYAQDKV RNEEQLL+ L+E++LD+
Sbjct: 645 PVAAGSPNSSESYLSLALEVALMGLGQQRLMPEGLYAQDKVCRNEEQLLSQLQELQLDDE 704
Query: 511 LVQVLRKQAGLLLEGGPFSGFGEVLFRESVPMHTCARYLFTALLPHDPDLAYRLALRAMR 570
LVQ L+KQ LLLEGGPFSG GEV+ RESVPMHT A+YLF+ALLPHDPDL+Y+LALRAMR
Sbjct: 705 LVQTLQKQCILLLEGGPFSGLGEVIHRESVPMHTFAKYLFSALLPHDPDLSYKLALRAMR 764
Query: 571 LPILETAFPAGEP-HPSPLDSIMSNRFPRWFILGHLETRQCELASTMLTAAKGDPKWLHT 629
LP+LE + AG+ HP + S++ +R+PRWF LGHLE++QCELASTMLTAAKGD L T
Sbjct: 765 LPVLENSASAGDTSHPHHMVSVVPSRYPRWFTLGHLESQQCELASTMLTAAKGDTLRLRT 824
Query: 630 VLGSIQQNIHSPALLFKLAQDACKTATPVSAPPDTTLLGIALELGLQVMRMTLNVMTWRR 689
+L +IQ++IHS +L+FKLAQDA K ATP + D+TLL +ALELGLQVMRMTL+ + WRR
Sbjct: 825 ILEAIQKHIHSSSLIFKLAQDAFKIATPTDSSTDSTLLNVALELGLQVMRMTLSTLNWRR 884
Query: 690 REMVRWLVSCATEIGPQALMNIMQNWYSLFTPVEAATIVAVTGTTHATLLRLQLDTSRRE 749
REMVRWLV+CATE+G +AL++I+Q+WY+LFTP EA +IVA T +H T+LRL LD +RE
Sbjct: 885 REMVRWLVTCATEVGVRALVSILQSWYTLFTPTEATSIVAATAVSHTTILRLSLDYPQRE 944
Query: 750 ELWACARTLALQCAMKDPQNCALPALTLCEKNHSAFEAAYQIVLDAAAGGLGHAHLFTVA 809
EL +CARTLALQCAMKDPQ+CAL ALTLCEK+H AFEAAYQI +DAAAGG+ H+ LFT+A
Sbjct: 945 ELASCARTLALQCAMKDPQSCALSALTLCEKDHIAFEAAYQIAIDAAAGGMTHSQLFTIA 1004
Query: 810 RYMEHRGLPLRAYKLATLALAQLSIAFNQDSHPAVNDVLWACSLSHSLGRHELSAIVPLI 869
RYME RG PLRA+KLA+LA++ L++A+NQD+HPA+NDVLWAC+LSHSLG++EL+A++PL+
Sbjct: 1005 RYMELRGYPLRAFKLASLAMSHLNLAYNQDTHPAINDVLWACALSHSLGKNELAALIPLV 1064
Query: 870 IRSIHCAPMLSDILRRWTLSAPGL-GPLGARRAAKPLGADRAPLCQLLDAAVTAYITTSH 928
++S+HCA +LSDILRR T++APGL G G R + K + D+APL QLLDA + AYI T+H
Sbjct: 1065 VKSVHCATVLSDILRRCTVTAPGLAGIPGRRSSGKLMSTDKAPLRQLLDATINAYINTTH 1124
Query: 929 SRLTHISPRHYGDFIEFLGKARETFLLAPDGHLQFSQFLENLKQTYKGKKKLMLLVRERF 988
SRLTHISPRHYG+FIEFL KARETFLL DGHLQF+QF++NLKQ YKGKKKLMLLVRERF
Sbjct: 1125 SRLTHISPRHYGEFIEFLSKARETFLLPQDGHLQFAQFIDNLKQIYKGKKKLMLLVRERF 1184
Query: 989 G 989
G
Sbjct: 1185 G 1185
Score = 523 bits (1347), Expect = e-148
Identities = 291/554 (52%), Positives = 342/554 (61%), Gaps = 80/554 (14%)
Query: 4 PAAKRSRGCPAGPEERDAGAGA------ARGRGRPEALLDLSAKRVAESWAFEQVEERFS 57
P A RG P G G+ AR +P++LLD +AK VAE WA+E+VEERF
Sbjct: 28 PQAHHPRGSPGAAGGGAGGVGSSCLVLGARPHLQPDSLLDCAAKTVAEKWAYERVEERFE 87
Query: 58 RVPEPVQKRIVFWSFPRSEREICMYSSLGY-----------------------PPPEGEH 94
R+PEPVQ+RIV+WSFPR+EREICMYSS Y PPP
Sbjct: 88 RIPEPVQRRIVYWSFPRNEREICMYSSFQYRGGPGAGAAGGAAGASPAEEGPQPPPGAAA 147
Query: 95 DAR---------------------------VPFTRGLHLLQSGAVDRVLQVGFHLSGNIR 127
A +PF RG+ LL SG+V+ VLQVGFHLSG +
Sbjct: 148 PAGSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRGIRLLDSGSVENVLQVGFHLSGTVT 207
Query: 128 EPGSPGEPERLYHVSISFDRCKITSVSCGCDNRDLFYCAHVVALSLYRIRHAHQVELRLP 187
E + EP Y V+ISFDRCKITSV+CGC N+D+FYCAHVVALSLYRIR QV+LRLP
Sbjct: 208 ELATASEPAVTYKVAISFDRCKITSVTCGCGNKDIFYCAHVVALSLYRIRKPDQVKLRLP 267
Query: 188 ISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGSEINLVNGAPDPTAGAG 247
ISETL QMNRDQLQKF+QYLI+AHHTEVLPTAQ+LADEIL SEIN VNGAPDPTAGA
Sbjct: 268 ISETLFQMNRDQLQKFIQYLITAHHTEVLPTAQKLADEILSSNSEINQVNGAPDPTAGAS 327
Query: 248 IEDANCWHLDEEQIQEQVKQLLSNGGYYGASQQLRSMFSKVREMLRMRDSNGARMLILMT 307
I+D NCWHLDEEQ++EQVK LS GGY G+ +QL SMF+KVREMLRMRDSNGARML L+T
Sbjct: 328 IDDENCWHLDEEQVKEQVKLFLSQGGYCGSGKQLNSMFAKVREMLRMRDSNGARMLTLIT 387
Query: 308 EQFLQDTRLALWRQQGAGMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQLLSRWDK 367
EQF+ D RL LWRQQG MTDKCRQLWDELGALWVC++L+PHCK EE++ WLQ L +W
Sbjct: 388 EQFVADPRLTLWRQQGTNMTDKCRQLWDELGALWVCIILNPHCKLEEKSCWLQQLQKWSD 447
Query: 368 LDVCPLEEGNYSFDGPSL-----QPTMAPAPELLQKGSTCITNT-EG----WVGHPLDPI 417
LDVCPLE+GNY + P++ Q + L + T T EG W L I
Sbjct: 448 LDVCPLEDGNYGHELPNITNALPQSAIHSPDSLSRPRRTVFTRAIEGRELHWQDSHLQRI 507
Query: 418 GCLCRALLEACRLEEETLTLYPDSGPEKRKVAYQHVPVP----------GSPGESYLVLA 467
AC+ E E L P + +HVP G P E+ +
Sbjct: 508 ISSDVYTAPACQRESERLLFNSQGQP----LWLEHVPTACARVDALRSHGYPKEALRLTV 563
Query: 468 LEVALLGLGQQRAL 481
+ L L QQR L
Sbjct: 564 AIINTLRLQQQRQL 577
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 781 bits (2016), Expect = 0.0
Identities = 384/603 (63%), Positives = 489/603 (81%), Gaps = 7/603 (1%)
Query: 394 ELLQKGSTCITNTEGWVGHPLDPIGCLCRALLEACRLEEETLTLYPD---SGPEKRKVAY 450
EL K T ITN EGWVGHPLDP+G L +L+EACR+++E L+ + D + + + + Y
Sbjct: 613 ELPHKNITSITNLEGWVGHPLDPVGTLFSSLMEACRIDDENLSGFSDFTENMGQCKSLEY 672
Query: 451 QHVPVPG--SPGESYLVLALEVALLGLGQQRALPEGLYAQDKVVRNEEQLLALLEEVELD 508
QH+P GESYL LA+EVAL+GLGQQR +P+GLY Q+KV RNEEQL++ L+E+ELD
Sbjct: 673 QHLPAHKFLEEGESYLTLAVEVALIGLGQQRIMPDGLYTQEKVCRNEEQLISKLQEIELD 732
Query: 509 ERLVQVLRKQAGLLLEGGPFSGFGEVLFRESVPMHTCARYLFTALLPHDPDLAYRLALRA 568
+ LV++ RKQA LLE GP+SG GE++ RESVPMHT A+YLFT+LLPHD +LAY++ALRA
Sbjct: 733 DTLVKIFRKQAVFLLEAGPYSGLGEIIHRESVPMHTFAKYLFTSLLPHDAELAYKIALRA 792
Query: 569 MRLPILETAFPAGE-PHPSPLDSIMSNRFPRWFILGHLETRQCELASTMLTAAKGDPKWL 627
MRL +LE+ P+G+ P + S++ NR+PRWF L H+E++QCELASTMLTAAKGD + L
Sbjct: 793 MRLLVLESTAPSGDLTRPHHIASVVPNRYPRWFTLSHIESQQCELASTMLTAAKGDVRRL 852
Query: 628 HTVLGSIQQNIHSPALLFKLAQDACKTATPVSAPPDTTLLGIALELGLQVMRMTLNVMTW 687
TVL SIQ+NIHS + +FKLAQDA K AT + + PD TLL ++LELGLQVMRMTL+ + W
Sbjct: 853 ETVLESIQKNIHSSSHIFKLAQDAFKIATLMDSLPDITLLKVSLELGLQVMRMTLSTLNW 912
Query: 688 RRREMVRWLVSCATEIGPQALMNIMQNWYSLFTPVEAATIVAVTGTTHATLLRLQLDTSR 747
RRREMVRWLV+CATE+G AL +IMQ W++LFTP EA +IVA T +++T++RL LD +
Sbjct: 913 RRREMVRWLVTCATEVGVYALDSIMQTWFTLFTPTEATSIVATTVMSNSTIVRLHLDCHQ 972
Query: 748 REELWACARTLALQCAMKDPQNCALPALTLCEKNHSAFEAAYQIVLDAAAGGLGHAHLFT 807
+E+L + ARTLALQCAMKDPQNCAL ALTLCEK+H AFE AYQIVLDAA G+ + LFT
Sbjct: 973 QEKLASSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYTQLFT 1032
Query: 808 VARYMEHRGLPLRAYKLATLALAQLSIAFNQDSHPAVNDVLWACSLSHSLGRHELSAIVP 867
+ARYMEHRG P+RAYKLATLA+ L++++NQD+HPA+NDVLWAC+LSHSLG++EL+AI+P
Sbjct: 1033 IARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIP 1092
Query: 868 LIIRSIHCAPMLSDILRRWTLSAPGL-GPLGARRAAKPLGADRAPLCQLLDAAVTAYITT 926
L+++S+ CA +LSDILRR TL+ PG+ G G R + K + D+APL QLLDA + AYI T
Sbjct: 1093 LVVKSVKCATVLSDILRRCTLTTPGMVGLHGRRNSGKLMSLDKAPLRQLLDATIGAYINT 1152
Query: 927 SHSRLTHISPRHYGDFIEFLGKARETFLLAPDGHLQFSQFLENLKQTYKGKKKLMLLVRE 986
+HSRLTHISPRHY +FIEFL KARETFL+A DGH+QF+QF++NLKQ YKGKKKLM+LVRE
Sbjct: 1153 THSRLTHISPRHYSEFIEFLSKARETFLMAHDGHIQFTQFIDNLKQIYKGKKKLMMLVRE 1212
Query: 987 RFG 989
RFG
Sbjct: 1213 RFG 1215
Score = 437 bits (1124), Expect = e-122
Identities = 205/295 (69%), Positives = 245/295 (83%)
Query: 91 EGEHDARVPFTRGLHLLQSGAVDRVLQVGFHLSGNIREPGSPGEPERLYHVSISFDRCKI 150
+G + R+PF RG+ LL+SG VD VLQVGFHLSG + EP EPE + +V+ISFDRCKI
Sbjct: 198 DGGDETRLPFRRGIALLESGCVDNVLQVGFHLSGTVTEPAIQSEPETVCNVAISFDRCKI 257
Query: 151 TSVSCGCDNRDLFYCAHVVALSLYRIRHAHQVELRLPISETLSQMNRDQLQKFVQYLISA 210
TSV+C C N+D+FYCAHVVALSLYRIR QV+L LPISETL QMNRDQLQKFVQYLI+
Sbjct: 258 TSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITV 317
Query: 211 HHTEVLPTAQRLADEILLLGSEINLVNGAPDPTAGAGIEDANCWHLDEEQIQEQVKQLLS 270
HHTEVLPTAQ+LADEIL SEIN V+GAPDPTAGA I+D NCWHLDEEQ+QEQVK LS
Sbjct: 318 HHTEVLPTAQKLADEILSQNSEINQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLS 377
Query: 271 NGGYYGASQQLRSMFSKVREMLRMRDSNGARMLILMTEQFLQDTRLALWRQQGAGMTDKC 330
GGY+G+ +QL +F+KVREML+MRDSNGARML L+TEQF+ D RL+LWRQQG MTDK
Sbjct: 378 QGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITEQFMADPRLSLWRQQGTAMTDKY 437
Query: 331 RQLWDELGALWVCVVLSPHCKPEERAGWLQLLSRWDKLDVCPLEEGNYSFDGPSL 385
RQLWDELGALW+C+VL+PHCK E++A WL+ L +W+ +DVCP E+GN+ + P+L
Sbjct: 438 RQLWDELGALWMCIVLNPHCKLEQKASWLKQLKKWNSVDVCPWEDGNHGSELPNL 492
Score = 102 bits (254), Expect = 2e-21
Identities = 51/88 (57%), Positives = 60/88 (68%), Gaps = 12/88 (13%)
Query: 9 SRGCPAGPEERDAGAGAARGRGR------------PEALLDLSAKRVAESWAFEQVEERF 56
S C GP A A AA G G PE+LLD++A+RVAE W F++VEERF
Sbjct: 39 SSACRPGPRAGGAAAAAACGGGAALGLLPPGKTQSPESLLDIAARRVAEKWPFQRVEERF 98
Query: 57 SRVPEPVQKRIVFWSFPRSEREICMYSS 84
R+PEPVQ+RIV+WSFPRSEREICMYSS
Sbjct: 99 ERIPEPVQRRIVYWSFPRSEREICMYSS 126
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 224 bits (572), Expect = 2e-58
Identities = 160/445 (35%), Positives = 219/445 (49%), Gaps = 67/445 (15%)
Query: 7 KRSRGCPAGPEERDAGAGAARGRGRPEA---LLDLSAKRVAESWAFEQVEERFSRVPEPV 63
K+S G P P G G+ R R L++LSAK+VA FE VE+ + VPE +
Sbjct: 46 KQSAG-PNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQL 104
Query: 64 QKRIVFWSFPRSEREICMYSSLGYPPPEGEHDARVPFTRGLHLLQSGAVDRVLQVGFHLS 123
Q RI FWSFP +E +I +YS L G D F RG L + AV LQ+GFHLS
Sbjct: 105 QLRIAFWSFPENEEDIRLYSCLA----NGSADE---FQRGDQLFRMRAVKDPLQIGFHLS 157
Query: 124 GNIREPGSPGEPERLYHVSISFDRCKITSVSCGCDNRDLFYCAHVVALSLYRIRHAHQVE 183
+ P P+ Y+V++ FDRC++TS SC C +C HVVAL L+RI +A V
Sbjct: 158 ATVVPPQMV-PPKGAYNVAVMFDRCRVTSCSCTC-GAGAKWCTHVVALCLFRIHNASAVC 215
Query: 184 LRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGS-EINLVNGAPDP 242
LR P+SE+LS++ RDQLQKF QYLIS ++LPTAQRL DE+L S IN V GAPDP
Sbjct: 216 LRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDP 275
Query: 243 TAGAGIEDANCWHLDEEQIQEQVKQLLS-------------NGGYYGASQQ--------- 280
TAG D + W+LDE + + +K+ L N Y +++
Sbjct: 276 TAGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACL 335
Query: 281 -----------LRSMFSKVREMLRMRDSNGARMLILMTEQFLQDTRLALW---------R 320
+ ++ S VREM + RDSN A +L ++T+Q L ++ W
Sbjct: 336 LRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASH 395
Query: 321 QQGAGMTDK-----------CRQLWDELGALWVCVVLSPHCKPEERAGWLQLLSRWDKLD 369
+G T + C + DE+ LW VL P P+ R L +W
Sbjct: 396 SSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCTQLRQWQLKV 455
Query: 370 VCPLEEGNYSFDGPSLQPTMAPAPE 394
+ ++ G + L P PA E
Sbjct: 456 IENVKRGQHKKTLERLFPGFRPAVE 480
Score = 65.5 bits (158), Expect = 2e-10
Identities = 77/285 (27%), Positives = 111/285 (38%), Gaps = 46/285 (16%)
Query: 716 YSLFTPVEAATIVA--------VTGTTHATLLRLQLDTSRREELWACARTLALQCAMKDP 767
YS+ P AAT V+ +T + T L L TS ELW ++ A P
Sbjct: 1568 YSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVACELWGQGTVSSVHPASTFP 1627
Query: 768 --QNCALPALTLCEKNHSAFEAAYQIVLDAAAGGLGHAHLFTVARYMEHRGLPL--RAYK 823
Q +LPALT +GG T ++ + L AY+
Sbjct: 1628 AIQGASLPALTTQPS-------------PLVSGGFPPPEEETHSQPVNPHSLHHLHAAYR 1674
Query: 824 LATLALAQLSIAFNQD-------SHPAVNDVLWACSLSHSLGRHELSAIVPLIIRSIH-- 874
+ LAL L + D S P +DV W L+ LG + +H
Sbjct: 1675 VGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLG-----------VNYVHQF 1723
Query: 875 CAPMLSDILRRWTLSAPGLGPLGARRAAKPLGADRAPLC-QLLDAAVTAYITTSHSRLTH 933
C +L + L + L A RAP QL+ AY+ H RL H
Sbjct: 1724 CVGAAKGVLSPFVLQEIVMETLQRLSPAHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIH 1783
Query: 934 ISPRHYGDFIEFLGKARETFLLAPDGHLQFSQFLENLKQTYKGKK 978
++P Y DF+ + AR F L P G +QF+ L+NLK++ + K+
Sbjct: 1784 LTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRSKQTKE 1828
Score = 33.9 bits (76), Expect = 0.78
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 20/146 (13%)
Query: 662 PDTTLLGIALELGLQVMRMTLNVM-TWRRREM---VRWLVSCATEIGPQALMNIMQNWYS 717
P L A E+GL + + V W R V W+ A EIG AL +++ W
Sbjct: 1278 PHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDG 1337
Query: 718 LFTPVEAATIVAVTGTTHATLLRLQLDTSRREELWACARTLALQC---AMKDPQNCALPA 774
TP E A++ + +R + A LAL C A N A
Sbjct: 1338 HLTPPEVASLAD------------RASRARDSNMVRAAAELALSCLPHAHALNPNEIQRA 1385
Query: 775 LTLC-EKNHSAFEAAYQIVLDAAAGG 799
L C E+++ E A V +AA GG
Sbjct: 1386 LVQCKEQDNLMLEKACMAVEEAAKGG 1411
>gi|229577000 ecotropic viral integration site 5-like isoform 1
[Homo sapiens]
Length = 805
Score = 33.5 bits (75), Expect = 1.0
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 175 RIRHAHQV----ELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLG 230
R+R A + E+R I+E Q ++Q +H++ + L D+I L
Sbjct: 658 RLREADSMAAVAEMRQRIAELEIQREEGRIQG------QLNHSDSSQYIRELKDQIEELK 711
Query: 231 SEINLVNGAP---DPTAGAGIEDANCWHLDEEQIQEQVKQLLSNG 272
+E+ L+ G P DP A G+ A HLDE+ + ++LL G
Sbjct: 712 AEVRLLKGPPPFEDPLAFDGLSLAR--HLDEDSLPSSDEELLGVG 754
>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
sapiens]
Length = 794
Score = 33.5 bits (75), Expect = 1.0
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 175 RIRHAHQV----ELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLG 230
R+R A + E+R I+E Q ++Q +H++ + L D+I L
Sbjct: 647 RLREADSMAAVAEMRQRIAELEIQREEGRIQG------QLNHSDSSQYIRELKDQIEELK 700
Query: 231 SEINLVNGAP---DPTAGAGIEDANCWHLDEEQIQEQVKQLLSNG 272
+E+ L+ G P DP A G+ A HLDE+ + ++LL G
Sbjct: 701 AEVRLLKGPPPFEDPLAFDGLSLAR--HLDEDSLPSSDEELLGVG 743
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 32.0 bits (71), Expect = 2.9
Identities = 59/248 (23%), Positives = 82/248 (33%), Gaps = 40/248 (16%)
Query: 325 GMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQLLSRWDKLDVCPLEEGNYSFDGPS 384
G R WD LW+ V++P P RAG L S + E S GPS
Sbjct: 363 GAATSSRHAWDTTALLWLATVMAPAPPPGSRAGPLYFSS--SSATLVEAAERTASPPGPS 420
Query: 385 LQPTMAPAPELLQKGSTCITNTEGWVGHPLDPIGCLCRALLEACRLE-----------EE 433
+ T+ S+C + P P C + E LE E
Sbjct: 421 VSLTVC------SLCSSCTFSVA--AAAPAAPSACDVLKMSEERSLELRWTRGFRRERNE 472
Query: 434 TLTLYPDSGPEKRKVAYQHVPVPGSPGESYLVLALEVALLGLGQQ---------RALPEG 484
+ P S R +P PG+ + + E+ G G Q RA P
Sbjct: 473 SCLARPGSSGPSRSGPLPPLPGPGTGTLPLVPVGSELREAGPGAQGEVIRVRETRAAPAK 532
Query: 485 LYAQDKVVRNEEQLLAL---------LEEVELDERLVQVLRKQAGLLLEGGPFSGFG-EV 534
L Q R E + L +E L+ +V V ++ L G G
Sbjct: 533 LLEQALRARRRELRVPLVLLLVELVTVEVAGLEAEVVAVAEERLPRHLPRGREVLHGARA 592
Query: 535 LFRESVPM 542
L RE+VP+
Sbjct: 593 LGREAVPL 600
>gi|195972890 unc-84 homolog A isoform a [Homo sapiens]
Length = 785
Score = 32.0 bits (71), Expect = 2.9
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 174 YRIRHAHQVELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGSEI 233
+ +R +H ++ + E S+ + +L++ Q ISA ++LPT + L E+ L SE+
Sbjct: 431 HEVRMSHLEDILGKLREK-SEAIQKELEQTKQKTISAVGEQLLPTVEHLQLELDQLKSEL 489
Query: 234 NLVNGAPDPTAGAGIEDANCWHLDEEQIQEQVKQLLSNGGYYGASQQLRSMFS 286
+ G DA +D Q++E VK L S G+ +QL FS
Sbjct: 490 SSWRHV---KTGCETVDAVQERVD-VQVREMVKLLFSEDQQGGSLEQLLQRFS 538
>gi|110227866 unc-84 homolog A isoform b [Homo sapiens]
Length = 702
Score = 32.0 bits (71), Expect = 2.9
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 174 YRIRHAHQVELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGSEI 233
+ +R +H ++ + E S+ + +L++ Q ISA ++LPT + L E+ L SE+
Sbjct: 348 HEVRMSHLEDILGKLREK-SEAIQKELEQTKQKTISAVGEQLLPTVEHLQLELDQLKSEL 406
Query: 234 NLVNGAPDPTAGAGIEDANCWHLDEEQIQEQVKQLLSNGGYYGASQQLRSMFS 286
+ G DA +D Q++E VK L S G+ +QL FS
Sbjct: 407 SSWRHV---KTGCETVDAVQERVD-VQVREMVKLLFSEDQQGGSLEQLLQRFS 455
>gi|167614498 killer cell lectin-like receptor subfamily D, member 1
isoform 1 [Homo sapiens]
Length = 179
Score = 31.6 bits (70), Expect = 3.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 379 SFDGPSLQPTMAPAPEL-LQKGSTCITNTEGWVGH 412
SF S++P P P + LQK S C + E WVG+
Sbjct: 34 SFTKLSIEPAFTPGPNIELQKDSDCCSCQEKWVGY 68
>gi|4504889 killer cell lectin-like receptor subfamily D, member 1
isoform 1 [Homo sapiens]
Length = 179
Score = 31.6 bits (70), Expect = 3.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 379 SFDGPSLQPTMAPAPEL-LQKGSTCITNTEGWVGH 412
SF S++P P P + LQK S C + E WVG+
Sbjct: 34 SFTKLSIEPAFTPGPNIELQKDSDCCSCQEKWVGY 68
>gi|153085395 histone deacetylase 4 [Homo sapiens]
Length = 1084
Score = 31.2 bits (69), Expect = 5.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 208 ISAHHTEVLPTAQRLADEILLLGSEINLVNGAPDPTAGAGIEDANCW 254
++A T V+P A A +++L+ S + V G P P G + A C+
Sbjct: 908 LAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNL-SARCF 953
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 30.8 bits (68), Expect = 6.6
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 608 RQCELASTMLTAAKGDPKWLHTVLGSIQQNIHSPALL-FKLAQDACKTATPVSAPPDTTL 666
+QCELA T+LTA +G P+ L ++ P L K ++ K+A+P +
Sbjct: 286 KQCELAPTLLTAMEGKPQPQQDSL----MHLLIPTLFHMKYPVESSKSASPFNLAEKPKT 341
Query: 667 LGIALELGLQVMRM 680
+ + L+ L V+ M
Sbjct: 342 VQLLLDFMLDVLLM 355
>gi|27886566 mucosa associated lymphoid tissue lymphoma
translocation protein 1 isoform b [Homo sapiens]
Length = 813
Score = 30.4 bits (67), Expect = 8.6
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 363 SRWDKLDVCPLEEG-NYSFDGPS---LQPTMAPAPELLQKGSTCITNTEGWVGHPL 414
S+W +LDVC + E S DG S LQ + P + L GST + VG P+
Sbjct: 201 SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA-VGSPI 255
>gi|5803078 mucosa associated lymphoid tissue lymphoma translocation
protein 1 isoform a [Homo sapiens]
Length = 824
Score = 30.4 bits (67), Expect = 8.6
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 363 SRWDKLDVCPLEEG-NYSFDGPS---LQPTMAPAPELLQKGSTCITNTEGWVGHPL 414
S+W +LDVC + E S DG S LQ + P + L GST + VG P+
Sbjct: 201 SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA-VGSPI 255
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 30.4 bits (67), Expect = 8.6
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 372 PLEEGNYSFDGPSLQPTMAPAP-ELLQKGS--TC--ITNTEGWVGHPLDP 416
PL+ G DGP LQ APAP LQ+ S TC +T G + P DP
Sbjct: 268 PLDAGWPWMDGPPLQAVFAPAPNHTLQRPSEQTCPQDLHTRGSLSSPQDP 317
>gi|7669499 killer cell lectin-like receptor subfamily D, member 1
isoform 2 [Homo sapiens]
Length = 148
Score = 30.4 bits (67), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 379 SFDGPSLQPTMAPAPEL-LQKGSTCITNTEGWVGH 412
+F S++P P P + LQK S C + E WVG+
Sbjct: 3 AFTKLSIEPAFTPGPNIELQKDSDCCSCQEKWVGY 37
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,825,789
Number of Sequences: 37866
Number of extensions: 1975925
Number of successful extensions: 5101
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5072
Number of HSP's gapped (non-prelim): 29
length of query: 989
length of database: 18,247,518
effective HSP length: 112
effective length of query: 877
effective length of database: 14,006,526
effective search space: 12283723302
effective search space used: 12283723302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.