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Search of human proteins with 190883480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190883480 nudix (nucleoside diphosphate linked moiety
X)-type motif 22 isoform a [Homo sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190883480 nudix (nucleoside diphosphate linked moiety X)-type... 616 e-177
gi|14150137 nudix (nucleoside diphosphate linked moiety X)-type ... 616 e-177
gi|190684699 nudix (nucleoside diphosphate linked moiety X)-type... 531 e-151
gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type ... 34 0.18
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 31 1.2
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 30 2.0
gi|155722983 TNF receptor-associated protein 1 [Homo sapiens] 29 4.5
gi|126131104 fibrocystin isoform 2 [Homo sapiens] 29 5.9
gi|126131102 fibrocystin isoform 1 [Homo sapiens] 29 5.9
gi|24308527 stereocilin [Homo sapiens] 28 7.7
gi|157388967 coiled-coil domain containing 87 [Homo sapiens] 28 7.7
>gi|190883480 nudix (nucleoside diphosphate linked moiety X)-type
motif 22 isoform a [Homo sapiens]
Length = 303
Score = 616 bits (1588), Expect = e-177
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK
Sbjct: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
Query: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP
Sbjct: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH 180
LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH
Sbjct: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH 180
Query: 181 ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 240
ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS
Sbjct: 181 ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 240
Query: 241 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 300
GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL
Sbjct: 241 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 300
Query: 301 PPL 303
PPL
Sbjct: 301 PPL 303
>gi|14150137 nudix (nucleoside diphosphate linked moiety X)-type
motif 22 isoform a [Homo sapiens]
Length = 303
Score = 616 bits (1588), Expect = e-177
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK
Sbjct: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
Query: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP
Sbjct: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH 180
LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH
Sbjct: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH 180
Query: 181 ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 240
ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS
Sbjct: 181 ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 240
Query: 241 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 300
GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL
Sbjct: 241 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 300
Query: 301 PPL 303
PPL
Sbjct: 301 PPL 303
>gi|190684699 nudix (nucleoside diphosphate linked moiety X)-type
motif 22 isoform b [Homo sapiens]
Length = 270
Score = 531 bits (1369), Expect = e-151
Identities = 270/303 (89%), Positives = 270/303 (89%), Gaps = 33/303 (10%)
Query: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK
Sbjct: 1 MDPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGGDEAITAIWETRLKAQPWLFDAPK 60
Query: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP
Sbjct: 61 FRLHSATLAPIGSRGPQLLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADP 120
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVH 180
LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ
Sbjct: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ-------------------- 160
Query: 181 ELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 240
VNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS
Sbjct: 161 -------------VNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLS 207
Query: 241 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 300
GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL
Sbjct: 208 GGPEAHESTGIFFVETQNVRRLPETEMWAELCPSAKGAIILYNRVQGSPTGAALGSPALL 267
Query: 301 PPL 303
PPL
Sbjct: 268 PPL 270
>gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type
motif 17 [Homo sapiens]
Length = 328
Score = 33.9 bits (76), Expect = 0.18
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 121 LGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPE-PQALCPGGSPQHQDLAGQLVV 179
LGV L ++D ++ RR+R ++ +P L PGGH E + L GG + + +G +
Sbjct: 93 LGVAVILQSSDKTVLLTRRARTLSVSPNLWVPPGGHVELEEELLDGGLRELWEESGLHLP 152
Query: 180 HELFSSVLQEICDEVNLPLLTLSQP 204
FS V + + P L+ P
Sbjct: 153 QGQFSWVPLGLWESAYPPRLSWGLP 177
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 31.2 bits (69), Expect = 1.2
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 147 PGLV--DVPGGHPEPQALCPGGSPQHQDLAGQLVVHELFSSVLQEICDEVNLPLL 199
PGL +P G PQ L PG P Q L+ H LF + L E +E+ L +L
Sbjct: 173 PGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSML 227
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 30.4 bits (67), Expect = 2.0
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 117 LADPLGV-GAALATADDFLVFLRRSRQVAEA----PGLVDVPGGHPEPQ---ALCPGGSP 168
LADPLG+ G AL D L +A P L+DVPG EPQ CP P
Sbjct: 303 LADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQQPLGHCPLAEP 362
Query: 169 QHQDL 173
DL
Sbjct: 363 LRLDL 367
>gi|155722983 TNF receptor-associated protein 1 [Homo sapiens]
Length = 704
Score = 29.3 bits (64), Expect = 4.5
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 134 LVFLRRSRQVAEAPGLVDVPGGHPEPQALCPGGSP----QHQDLAGQLVVHELFSSVLQE 189
L++ RR R + AP L VPGG P LCP + ++ A L LFS+ E
Sbjct: 9 LLWGRRLRPLLRAPALAAVPGGKP---ILCPRRTTAQLGPRRNPAWSLQAGRLFSTQTAE 65
Query: 190 ICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQ 233
+E +++ ++ + +++E A V SL SE+
Sbjct: 66 DKEEPLHSIISSTESVQGSTSKHEFQAETKKLLDIVARSLYSEK 109
>gi|126131104 fibrocystin isoform 2 [Homo sapiens]
Length = 3396
Score = 28.9 bits (63), Expect = 5.9
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 199 LTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLSGGPEAH---ESTGIFFVE 255
L +S L G+ R E S A+ YVQC LT + L P + ES+ FV
Sbjct: 1792 LDVSLAFLCGLKREEDSC-EAARHTYVQCDLTVAMATEQLLESWPYLYICEESSQCLFV- 1849
Query: 256 TQNVRRLPETEMWAE-LCPSAKGAII 280
+ WAE + PS G I
Sbjct: 1850 ---------PDHWAESMFPSFSGLFI 1866
>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
Length = 4074
Score = 28.9 bits (63), Expect = 5.9
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 199 LTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHYLSGGPEAH---ESTGIFFVE 255
L +S L G+ R E S A+ YVQC LT + L P + ES+ FV
Sbjct: 1792 LDVSLAFLCGLKREEDSC-EAARHTYVQCDLTVAMATEQLLESWPYLYICEESSQCLFV- 1849
Query: 256 TQNVRRLPETEMWAE-LCPSAKGAII 280
+ WAE + PS G I
Sbjct: 1850 ---------PDHWAESMFPSFSGLFI 1866
>gi|24308527 stereocilin [Homo sapiens]
Length = 1775
Score = 28.5 bits (62), Expect = 7.7
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 105 QGATDWGDTQAYLADPLGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQALCP 164
+G+ DW L D L + T DFLV Q GLV+V G AL P
Sbjct: 101 RGSPDWEPMLGLLGDMLALLGQEQTPRDFLV-----HQAGVLGGLVEVLLG-----ALVP 150
Query: 165 GGSP 168
GG P
Sbjct: 151 GGPP 154
>gi|157388967 coiled-coil domain containing 87 [Homo sapiens]
Length = 849
Score = 28.5 bits (62), Expect = 7.7
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 137 LRRSRQVAEAPGLVDVPGGHPEPQALCPGGSPQHQDLAGQLVVHELFSSVLQEICDEVNL 196
LR ++A+ GL +P P L P+ L G +V +L + + +
Sbjct: 315 LREGWRLADELGLPPLPSRPLTPLVLATESKPE---LTGLIVAEDLKQLIKKMKLEGTRY 371
Query: 197 PLLTLSQPLLLGIARNETSAGRASAE 222
P L P LLG+ +AG E
Sbjct: 372 PPLDSGLPPLLGVVTRHPAAGHRLEE 397
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,824,676
Number of Sequences: 37866
Number of extensions: 703692
Number of successful extensions: 1741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1733
Number of HSP's gapped (non-prelim): 14
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.