Guide to the Human Genome
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Name: TMEM161A Sequence: fasta or formatted (479aa) NCBI GI: 8923394
Description:

transmembrane protein 161A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         45           2
 C cysteine            2.1         10           1
 D aspartate           2.3         11           1
 E glutamate           5.4         26           3
 F phenylalanine       5.6         27           2
 G glycine             6.7         32           2
 H histidine           1.9          9           1
 I isoleucine          2.3         11           1
 K lysine              2.5         12           2
 L leucine            18.8         90           3
 M methionine          1.7          8           1
 N asparagine          1.0          5           1
 P proline             5.4         26           2
 Q glutamine           3.8         18           2
 R arginine            6.5         31           2
 S serine              5.6         27           2
 T threonine           6.3         30           2
 V valine              7.1         34           2
 W tryptophan          2.5         12           2
 Y tyrosine            3.1         15           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 161A 
TMEM161B              0.471   transmembrane protein 161B 
TRIM47                0.009   tripartite motif-containing 47 
MAP3K7IP3             0.007   mitogen-activated protein kinase kinase kinase 7 int...
MAP1B                 0.007   microtubule-associated protein 1B 
BRF2                  0.006   RNA polymerase III transcription initiation factor B...
CASKIN2               0.006   cask-interacting protein 2 isoform b 
CASKIN2               0.006   cask-interacting protein 2 isoform a 
ATPGD1                0.005   ATP-grasp domain containing 1 
FZD3                  0.005   frizzled 3 
PRTG                  0.005   protogenin 
GDPD5                 0.005   glycerophosphodiester phosphodiesterase domain cont...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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