Search of human proteins with 188497708

Search of human proteins with 188497708

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|188497708 cytochrome b reductase 1 isoform 2 [Homo sapiens]
         (157 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|188497708 cytochrome b reductase 1 isoform 2 [Homo sapiens]        339   5e-94
gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens]        138   2e-33
gi|241896889 cytochrome b, ascorbate dependent 3 isoform 2 [Homo...    58   4e-09
gi|241896875 cytochrome b, ascorbate dependent 3 isoform 1 [Homo...    58   4e-09
gi|241896864 cytochrome b, ascorbate dependent 3 isoform 2 [Homo...    58   4e-09
gi|63054832 cytochrome b-561 [Homo sapiens]                            43   1e-04
gi|63054830 cytochrome b-561 [Homo sapiens]                            43   1e-04
gi|63054828 cytochrome b-561 [Homo sapiens]                            43   1e-04
gi|4826764 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1...    29   1.4  
gi|6912458 calcineurin binding protein 1 [Homo sapiens]                28   2.5  
gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]         28   3.2  
gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo ...    27   5.5  
gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo ...    27   5.5  
gi|21361315 transmembrane 9 superfamily member 1 isoform a [Homo...    27   5.5  
gi|13375616 fatty acid desaturase 3 [Homo sapiens]                     27   7.1  

>gi|188497708 cytochrome b reductase 1 isoform 2 [Homo sapiens]
          Length = 157

 Score =  339 bits (870), Expect = 5e-94
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF 60
           MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF
Sbjct: 1   MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF 60

Query: 61  IQGIASFRFFSLSASMGSAFSPSISHAHTCLFWNCHLWNSDCNSTYGIDRETDFFPERSC 120
           IQGIASFRFFSLSASMGSAFSPSISHAHTCLFWNCHLWNSDCNSTYGIDRETDFFPERSC
Sbjct: 61  IQGIASFRFFSLSASMGSAFSPSISHAHTCLFWNCHLWNSDCNSTYGIDRETDFFPERSC 120

Query: 121 IQYIPARRCFRKYAWPSDPGVRGPHFLDSHQTAMETS 157
           IQYIPARRCFRKYAWPSDPGVRGPHFLDSHQTAMETS
Sbjct: 121 IQYIPARRCFRKYAWPSDPGVRGPHFLDSHQTAMETS 157


>gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens]
          Length = 286

 Score =  138 bits (347), Expect = 2e-33
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF 60
          MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF
Sbjct: 1  MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF 60

Query: 61 IQGIA 65
          IQGIA
Sbjct: 61 IQGIA 65


>gi|241896889 cytochrome b, ascorbate dependent 3 isoform 2 [Homo
          sapiens]
          Length = 242

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 12 LLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIASFRFFS 71
          LLGS   +G + ++F + W+ ++R G  W+GS   FNWHPVLMV G V   G AS  +  
Sbjct: 12 LLGS---LGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYRL 68

Query: 72 LSASMGSAFSPSISHA 87
            + +G      + HA
Sbjct: 69 PQSWVGPKLPWKLLHA 84


>gi|241896875 cytochrome b, ascorbate dependent 3 isoform 1 [Homo
           sapiens]
          Length = 259

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 12  LLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIASFRFFS 71
           LLGS   +G + ++F + W+ ++R G  W+GS   FNWHPVLMV G V   G AS  +  
Sbjct: 29  LLGS---LGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYRL 85

Query: 72  LSASMGSAFSPSISHA 87
             + +G      + HA
Sbjct: 86  PQSWVGPKLPWKLLHA 101


>gi|241896864 cytochrome b, ascorbate dependent 3 isoform 2 [Homo
          sapiens]
          Length = 242

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 12 LLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIASFRFFS 71
          LLGS   +G + ++F + W+ ++R G  W+GS   FNWHPVLMV G V   G AS  +  
Sbjct: 12 LLGS---LGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYRL 68

Query: 72 LSASMGSAFSPSISHA 87
            + +G      + HA
Sbjct: 69 PQSWVGPKLPWKLLHA 84


>gi|63054832 cytochrome b-561 [Homo sapiens]
          Length = 251

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 18 LVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIA 65
          L+G   V     W+  YR G+ W+ S L+FN HP+ MV G +F+QG A
Sbjct: 22 LLGLTLVAMTGAWLGLYRGGIAWE-SDLQFNAHPLCMVIGLIFLQGNA 68


>gi|63054830 cytochrome b-561 [Homo sapiens]
          Length = 251

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 18 LVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIA 65
          L+G   V     W+  YR G+ W+ S L+FN HP+ MV G +F+QG A
Sbjct: 22 LLGLTLVAMTGAWLGLYRGGIAWE-SDLQFNAHPLCMVIGLIFLQGNA 68


>gi|63054828 cytochrome b-561 [Homo sapiens]
          Length = 251

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 18 LVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIA 65
          L+G   V     W+  YR G+ W+ S L+FN HP+ MV G +F+QG A
Sbjct: 22 LLGLTLVAMTGAWLGLYRGGIAWE-SDLQFNAHPLCMVIGLIFLQGNA 68


>gi|4826764 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1
           precursor [Homo sapiens]
          Length = 307

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 30  WVLHYREGLGWDGSALEFNWHPVLMV--TGFVFIQGIASFRFFSLSASM 76
           W  HY  GLGW  S + F+W   L V  T   F       R +S++ S+
Sbjct: 92  WEEHYSHGLGWYLSQMPFSWPHQLTVEKTPAYFTSPKVPERVYSMNPSI 140


>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
          Length = 2220

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 83  SISHAHTCLFWNCHLWNSDCNSTYGIDRETDFFPERSCIQ 122
           ++S   TCL++ C     DC  + G+  +   F E+ C++
Sbjct: 170 TLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQPCLR 209


>gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]
          Length = 222

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 42 GSALEFNWHPVLMVTGFVFIQGIASFRFFSLSASMGSAFSPSISHAHTCL 91
          GS+L F+WHPVLM   F F+   A   F   S+ + S      +  H  L
Sbjct: 41 GSSL-FSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVL 89


>gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo
           sapiens]
          Length = 259

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 53  LMVTGFVFIQGIASFRFFSLSASMGSAFSPSISHAHTCLFWNCHLWNSDCNSTY 106
           +M T  V + G+A     + +AS  SA S S+    T ++W    W + C +T+
Sbjct: 58  VMATCSVRLSGVAMVMVSAAAASGPSAVSSSMVTFCTMIWWPALAWCTICCTTF 111


>gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo
           sapiens]
          Length = 259

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 53  LMVTGFVFIQGIASFRFFSLSASMGSAFSPSISHAHTCLFWNCHLWNSDCNSTY 106
           +M T  V + G+A     + +AS  SA S S+    T ++W    W + C +T+
Sbjct: 58  VMATCSVRLSGVAMVMVSAAAASGPSAVSSSMVTFCTMIWWPALAWCTICCTTF 111


>gi|21361315 transmembrane 9 superfamily member 1 isoform a [Homo
           sapiens]
          Length = 606

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 6   YWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIA 65
           +WR +  +GS  L  FL  +F      +Y       G+     +    ++TG+VF   + 
Sbjct: 532 WWRSVLSVGSTGLFIFLYSVF------YYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLG 585

Query: 66  SFRFFS 71
           +  FFS
Sbjct: 586 TISFFS 591


>gi|13375616 fatty acid desaturase 3 [Homo sapiens]
          Length = 445

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 16  ALLVGFLSVIFALVWVLHYREGLGWDGSAL 45
           A L+G +  +  L W+L Y  G GW  SAL
Sbjct: 136 AFLLGHILAMEVLAWLLIYLLGPGWVPSAL 165


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.140    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,188,024
Number of Sequences: 37866
Number of extensions: 256846
Number of successful extensions: 648
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.