Search of human proteins with 103471989

Search of human proteins with 103471989

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|103471989 kaptin (actin binding protein) [Homo sapiens]
         (436 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|103471989 kaptin (actin binding protein) [Homo sapiens]            869   0.0  
gi|47777317 cartilage acidic protein 1 [Homo sapiens]                  31   1.9  
gi|157837985 kazrin isoform E [Homo sapiens]                           30   5.6  
gi|63147424 kazrin isoform A [Homo sapiens]                            30   5.6  
gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo s...    29   7.3  
gi|21361805 integrin alpha FG-GAP repeat containing 2 [Homo sapi...    29   7.3  
gi|32528301 EPH receptor B4 precursor [Homo sapiens]                   29   9.6  
gi|4758284 ephrin receptor EphB1 precursor [Homo sapiens]              29   9.6  

>gi|103471989 kaptin (actin binding protein) [Homo sapiens]
          Length = 436

 Score =  869 bits (2245), Expect = 0.0
 Identities = 436/436 (100%), Positives = 436/436 (100%)

Query: 1   MMGEAAVAAGPCPLREDSFTRFSSQSNVYGLAGGAGGRGELLAATLKGKVLGFRYQDLRQ 60
           MMGEAAVAAGPCPLREDSFTRFSSQSNVYGLAGGAGGRGELLAATLKGKVLGFRYQDLRQ
Sbjct: 1   MMGEAAVAAGPCPLREDSFTRFSSQSNVYGLAGGAGGRGELLAATLKGKVLGFRYQDLRQ 60

Query: 61  KIRPVAKELQFNYIPVDAEIVSIDTFNKSPPKRGLVVGITFIKDSGDKGSPFLNIYCDYE 120
           KIRPVAKELQFNYIPVDAEIVSIDTFNKSPPKRGLVVGITFIKDSGDKGSPFLNIYCDYE
Sbjct: 61  KIRPVAKELQFNYIPVDAEIVSIDTFNKSPPKRGLVVGITFIKDSGDKGSPFLNIYCDYE 120

Query: 121 PGSEYNLDSIAQSCLNLELQFTPFQLCHAEVQVGDQLETVFLLSGNDPAIHLYKENEGLH 180
           PGSEYNLDSIAQSCLNLELQFTPFQLCHAEVQVGDQLETVFLLSGNDPAIHLYKENEGLH
Sbjct: 121 PGSEYNLDSIAQSCLNLELQFTPFQLCHAEVQVGDQLETVFLLSGNDPAIHLYKENEGLH 180

Query: 181 QFEEQPVENLFPELTNLTSSVLWLDVHNFPGTSRRLSALGCQSGYVRVAHVDQRSREVLQ 240
           QFEEQPVENLFPELTNLTSSVLWLDVHNFPGTSRRLSALGCQSGYVRVAHVDQRSREVLQ
Sbjct: 181 QFEEQPVENLFPELTNLTSSVLWLDVHNFPGTSRRLSALGCQSGYVRVAHVDQRSREVLQ 240

Query: 241 MWSVLQDGPISRVIVFSLSAAKETKDRPLQDEYSVLVASMLEPAVVYRDLLNRGLEDQLL 300
           MWSVLQDGPISRVIVFSLSAAKETKDRPLQDEYSVLVASMLEPAVVYRDLLNRGLEDQLL
Sbjct: 241 MWSVLQDGPISRVIVFSLSAAKETKDRPLQDEYSVLVASMLEPAVVYRDLLNRGLEDQLL 300

Query: 301 LPGSDQFDSVLCSLVTDVDLDGRPEVLVATYGQELLCYKYRGPESGLPEAQHGFHLLWQR 360
           LPGSDQFDSVLCSLVTDVDLDGRPEVLVATYGQELLCYKYRGPESGLPEAQHGFHLLWQR
Sbjct: 301 LPGSDQFDSVLCSLVTDVDLDGRPEVLVATYGQELLCYKYRGPESGLPEAQHGFHLLWQR 360

Query: 361 SFSSPLLAMAHVDLTGDGLQELAVVSLKGVHILQHSLIQASELVLTRLRHQVEQRRRRLQ 420
           SFSSPLLAMAHVDLTGDGLQELAVVSLKGVHILQHSLIQASELVLTRLRHQVEQRRRRLQ
Sbjct: 361 SFSSPLLAMAHVDLTGDGLQELAVVSLKGVHILQHSLIQASELVLTRLRHQVEQRRRRLQ 420

Query: 421 GLEDGAGAGPAENAAS 436
           GLEDGAGAGPAENAAS
Sbjct: 421 GLEDGAGAGPAENAAS 436


>gi|47777317 cartilage acidic protein 1 [Homo sapiens]
          Length = 661

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 315 VTDVDLDGRPEVLVATYGQELLCYKYRGPESGL-----PEAQHGFHLLWQRSFSSPLLAM 369
           VTDVD DG  E++VA Y    L  KY   +  L      E    ++ L  R  ++  + +
Sbjct: 60  VTDVDHDGDFEIVVAGYNGPNLVLKYDRAQKRLVNIAVDERSSPYYALRDRQGNA--IGV 117

Query: 370 AHVDLTGDGLQEL 382
              D+ GDG +E+
Sbjct: 118 TACDIDGDGREEI 130


>gi|157837985 kazrin isoform E [Homo sapiens]
          Length = 775

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 398 IQASELVLTRLRHQVEQRRRRLQGLEDGAGAGPAENAAS 436
           +Q++   +T LR ++    RRL  L  G G GP   AA+
Sbjct: 16  VQSASQEVTNLRAELTATNRRLAELSGGGGPGPGPGAAA 54


>gi|63147424 kazrin isoform A [Homo sapiens]
          Length = 421

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 398 IQASELVLTRLRHQVEQRRRRLQGLEDGAGAGPAENAAS 436
           +Q++   +T LR ++    RRL  L  G G GP   AA+
Sbjct: 16  VQSASQEVTNLRAELTATNRRLAELSGGGGPGPGPGAAA 54


>gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo
           sapiens]
          Length = 874

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 57  DLRQKIRPVAKELQFN-------YIPVDAEIVSIDTFNKS------PPKRGLVVGITFIK 103
           +L Q+  P  ++LQFN       +     E+  +    KS      PP +  + G  +++
Sbjct: 216 ELAQEFAPYKQQLQFNLQNTRNNFESTRQEVERLMQRMKSANQDYRPPSQWTMEGYLYVQ 275

Query: 104 DSGDKGSPFLNIYCDYEPGSEYNLDSIAQ 132
           +    G  ++  YC Y+ GS+    S+++
Sbjct: 276 EKRPLGFTWIKHYCTYDKGSKTFTMSVSE 304


>gi|21361805 integrin alpha FG-GAP repeat containing 2 [Homo
           sapiens]
          Length = 447

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 347 LPEAQHGFHLLWQRSFSSPLLAMAHVDLTGDGLQELAVVSLKG-VHILQHSLIQASELVL 405
           + E +    LLW       L A+  +D+TG+G +E+   +  G  +I+ H+         
Sbjct: 288 MEEMEEADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHN--------R 339

Query: 406 TRLRHQVEQRRR 417
           T +R QV++  R
Sbjct: 340 TVVRFQVDENIR 351


>gi|32528301 EPH receptor B4 precursor [Homo sapiens]
          Length = 987

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 53  FRYQDLRQKIRPVAKELQFNYIPVDAEIVSIDTFN-------KSPPKRGLVVGITFIK 103
           F Y+D  + +R  AKE+  +Y+ ++ E++    F        K+P K+   V I  +K
Sbjct: 594 FTYEDPNEAVREFAKEIDVSYVKIE-EVIGAGEFGEVCRGRLKAPGKKESCVAIKTLK 650


>gi|4758284 ephrin receptor EphB1 precursor [Homo sapiens]
          Length = 984

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 53  FRYQDLRQKIRPVAKELQFNYIPVDAEIVSIDTFN-------KSPPKRGLVVGITFIK 103
           F Y+D  + +R  AKE+  +++ ++ E++    F        K P KR + V I  +K
Sbjct: 598 FTYEDPNEAVREFAKEIDVSFVKIE-EVIGAGEFGEVYKGRLKLPGKREIYVAIKTLK 654


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,371,515
Number of Sequences: 37866
Number of extensions: 799682
Number of successful extensions: 1710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1707
Number of HSP's gapped (non-prelim): 8
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.