Search of human proteins with 10337585

Search of human proteins with 10337585

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10337585 defensin, alpha 5 preproprotein [Homo sapiens]
         (94 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10337585 defensin, alpha 5 preproprotein [Homo sapiens]            185   6e-48
gi|4503303 defensin, alpha 4 preproprotein [Homo sapiens]              84   2e-17
gi|4758146 defensin, alpha 1 preproprotein [Homo sapiens]              82   1e-16
gi|124248516 alpha-defensin 1 [Homo sapiens]                           82   1e-16
gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens]              81   2e-16
gi|4885179 defensin, alpha 3 preproprotein [Homo sapiens]              81   2e-16
gi|66346695 fibrillin 2 precursor [Homo sapiens]                       28   1.6  
gi|55770834 centromere protein F [Homo sapiens]                        26   6.0  
gi|63055049 phosphoglucomutase 2 [Homo sapiens]                        26   7.9  

>gi|10337585 defensin, alpha 5 preproprotein [Homo sapiens]
          Length = 94

 Score =  185 bits (470), Expect = 6e-48
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MRTIAILAAILLVALQAQAESLQERADEATTQKQSGEDNQDLAISFAGNGLSALRTSGSQ 60
          MRTIAILAAILLVALQAQAESLQERADEATTQKQSGEDNQDLAISFAGNGLSALRTSGSQ
Sbjct: 1  MRTIAILAAILLVALQAQAESLQERADEATTQKQSGEDNQDLAISFAGNGLSALRTSGSQ 60

Query: 61 ARATCYCRTGRCATRESLSGVCEISGRLYRLCCR 94
          ARATCYCRTGRCATRESLSGVCEISGRLYRLCCR
Sbjct: 61 ARATCYCRTGRCATRESLSGVCEISGRLYRLCCR 94


>gi|4503303 defensin, alpha 4 preproprotein [Homo sapiens]
          Length = 97

 Score = 84.0 bits (206), Expect = 2e-17
 Identities = 47/93 (50%), Positives = 57/93 (61%)

Query: 1  MRTIAILAAILLVALQAQAESLQERADEATTQKQSGEDNQDLAISFAGNGLSALRTSGSQ 60
          MR IA+LAAILLVALQ +A  LQ R DEA  Q+Q G ++QD++ISFA +  SAL+ SGS 
Sbjct: 1  MRIIALLAAILLVALQVRAGPLQARGDEAPGQEQRGPEDQDISISFAWDKSSALQVSGST 60

Query: 61 ARATCYCRTGRCATRESLSGVCEISGRLYRLCC 93
              C CR   C   E   G C I G  +  CC
Sbjct: 61 RGMVCSCRLVFCRRTELRVGNCLIGGVSFTYCC 93


>gi|4758146 defensin, alpha 1 preproprotein [Homo sapiens]
          Length = 94

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 46/94 (48%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 1  MRTIAILAAILLVALQAQAESLQERADE-ATTQKQSGEDNQDLAISFAGNGLSALRTSGS 59
          MRT+AILAAILLVALQAQAE LQ RADE A   +Q   D  ++ +S A +   A +  GS
Sbjct: 1  MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60

Query: 60 QARATCYCRTGRCATRESLSGVCEISGRLYRLCC 93
          +    CYCR   C   E   G C   GRL+  CC
Sbjct: 61 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC 94


>gi|124248516 alpha-defensin 1 [Homo sapiens]
          Length = 94

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 46/94 (48%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 1  MRTIAILAAILLVALQAQAESLQERADE-ATTQKQSGEDNQDLAISFAGNGLSALRTSGS 59
          MRT+AILAAILLVALQAQAE LQ RADE A   +Q   D  ++ +S A +   A +  GS
Sbjct: 1  MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60

Query: 60 QARATCYCRTGRCATRESLSGVCEISGRLYRLCC 93
          +    CYCR   C   E   G C   GRL+  CC
Sbjct: 61 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC 94


>gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens]
          Length = 100

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 8/100 (8%)

Query: 1  MRTIAILAAILLVALQAQAESLQERAD-------EATTQKQSGEDNQDLAISFAGNGLSA 53
          MRT+ IL A+LLVALQA+AE LQ   D       EA  Q+Q G ++QD A+SFA +  S+
Sbjct: 1  MRTLTILTAVLLVALQAKAEPLQAEDDPLQAKAYEADAQEQRGANDQDFAVSFAEDASSS 60

Query: 54 LRTSGSQARATCYCRTGRCATRESLSGVCEISGRLYRLCC 93
          LR  GS    TC+CR   C + E   G C + G  +R CC
Sbjct: 61 LRALGSTRAFTCHCRRS-CYSTEYSYGTCTVMGINHRFCC 99


>gi|4885179 defensin, alpha 3 preproprotein [Homo sapiens]
          Length = 94

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 46/94 (48%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 1  MRTIAILAAILLVALQAQAESLQERADE-ATTQKQSGEDNQDLAISFAGNGLSALRTSGS 59
          MRT+AILAAILLVALQAQAE LQ RADE A   +Q   D  ++ +S A +   A +  GS
Sbjct: 1  MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 60

Query: 60 QARATCYCRTGRCATRESLSGVCEISGRLYRLCC 93
          +    CYCR   C   E   G C   GRL+  CC
Sbjct: 61 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 94


>gi|66346695 fibrillin 2 precursor [Homo sapiens]
          Length = 2912

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 39  NQDLAISFAG--NGLSALRTSGSQARATCYCRTGRCATRESLSGVCEISG-RLYRLCC 93
           +Q   + F+G  NG  A    G   +  C C  GRC    ++   C + G   YR  C
Sbjct: 360 DQRTGMCFSGLVNGRCAQELPGRMTKMQCCCEPGRCWGIGTIPEACPVRGSEEYRRLC 417


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 16   QAQAESLQERADEATTQKQSGEDNQDLAISFAGNGLSALRTSGSQ 60
            + + +SL+++ +    + Q  E+NQ+L I  A N  + + T  +Q
Sbjct: 2146 ERENDSLKDKVENLERELQMSEENQELVILDAENSKAEVETLKTQ 2190


>gi|63055049 phosphoglucomutase 2 [Homo sapiens]
          Length = 612

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 35  SGEDNQDLAISFAGNGLSALRTSGSQARATCY 66
           + + +Q +  +FA  G++ +RTSG++ +   Y
Sbjct: 538 TSKSSQMITFTFANGGVATMRTSGTEPKIKYY 569


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,784,888
Number of Sequences: 37866
Number of extensions: 92386
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 9
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.