Guide to the Human Genome
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Name: DEFA3 Sequence: fasta or formatted (94aa) NCBI GI: 4885179
Description:

defensin, alpha 3 preproprotein

Referenced in:

Neutrophils, Eosinophils, and Basophils
Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.1         18           3
 C cysteine            6.4          6           2
 D aspartate           4.3          4           1
 E glutamate           6.4          6           1
 F phenylalanine       1.1          1           1
 G glycine             4.3          4           1
 H histidine           1.1          1           1
 I isoleucine          7.4          7           1
 K lysine              2.1          2           1
 L leucine             9.6          9           2
 M methionine          2.1          2           1
 N asparagine          1.1          1           1
 P proline             6.4          6           1
 Q glutamine           5.3          5           1
 R arginine            7.4          7           2
 S serine              3.2          3           1
 T threonine           2.1          2           1
 V valine              5.3          5           3
 W tryptophan          2.1          2           1
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, alpha 3 preproprotein 
DEFA1                 0.982   defensin, alpha 1 preproprotein 
LOC728358             0.982   alpha-defensin 1 
DEFA4                 0.335   defensin, alpha 4 preproprotein 
DEFA5                 0.329   defensin, alpha 5 preproprotein 
DEFA6                 0.288   defensin, alpha 6 preproprotein 
FAM48B1               0.012   hypothetical protein LOC100130302 
FAM180B               0.006   PREDICTED: hypothetical protein 
FAM180B               0.006   PREDICTED: hypothetical protein 
FAM180B               0.006   PREDICTED: hypothetical protein 
FUT11                 0.006   fucosyltransferase 11 (alpha (1,3) fucosyltransfera...
DICER1                0.006   dicer1 
DICER1                0.006   dicer1 
EPHB2                 0.006   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.006   ephrin receptor EphB2 isoform 2 precursor 
RASA3                 0.006   RAS p21 protein activator 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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