Search of human proteins with 10047104

Search of human proteins with 10047104

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10047104 synovial sarcoma translocation gene on chromosome
18-like 2 [Homo sapiens]
         (77 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10047104 synovial sarcoma translocation gene on chromosome 18...   158   1e-39
gi|39777614 SS18-like protein 1 [Homo sapiens]                         94   3e-20
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor...    83   5e-17
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor...    83   5e-17
gi|13376810 enhancer of polycomb 1 [Homo sapiens]                      28   2.1  
gi|71061468 centromere protein E [Homo sapiens]                        27   3.5  
gi|68163572 hypothetical protein LOC84077 [Homo sapiens]               27   4.6  
gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2 ...    26   7.9  
gi|13236583 BRCA1/BRCA2-containing complex, subunit 3 isoform 1 ...    26   7.9  
gi|9558729 golgi associated, gamma adaptin ear containing, ARF b...    26   7.9  

>gi|10047104 synovial sarcoma translocation gene on chromosome
          18-like 2 [Homo sapiens]
          Length = 77

 Score =  158 bits (399), Expect = 1e-39
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60
          MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY
Sbjct: 1  MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60

Query: 61 LATIADASPTSTSKAME 77
          LATIADASPTSTSKAME
Sbjct: 61 LATIADASPTSTSKAME 77


>gi|39777614 SS18-like protein 1 [Homo sapiens]
          Length = 396

 Score = 93.6 bits (231), Expect = 3e-20
 Identities = 44/73 (60%), Positives = 56/73 (76%)

Query: 1  MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60
          MSVAF     RGK EV Q+TIQ++L+EN  LI+CI+EYQ+KG+  EC QYQ +LHRNL+Y
Sbjct: 1  MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY 60

Query: 61 LATIADASPTSTS 73
          LATIAD++    S
Sbjct: 61 LATIADSNQNMQS 73


>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform
          1 [Homo sapiens]
          Length = 418

 Score = 82.8 bits (203), Expect = 5e-17
 Identities = 38/73 (52%), Positives = 53/73 (72%)

Query: 1  MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60
          MSVAF     RGK E+    IQ++L++N+ LI+CI++ QNKG+ +EC QYQ +LH NL+Y
Sbjct: 1  MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60

Query: 61 LATIADASPTSTS 73
          LATIAD++    S
Sbjct: 61 LATIADSNQNMQS 73


>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform
          2 [Homo sapiens]
          Length = 387

 Score = 82.8 bits (203), Expect = 5e-17
 Identities = 38/73 (52%), Positives = 53/73 (72%)

Query: 1  MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60
          MSVAF     RGK E+    IQ++L++N+ LI+CI++ QNKG+ +EC QYQ +LH NL+Y
Sbjct: 1  MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60

Query: 61 LATIADASPTSTS 73
          LATIAD++    S
Sbjct: 61 LATIADSNQNMQS 73


>gi|13376810 enhancer of polycomb 1 [Homo sapiens]
          Length = 836

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 12  GKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGN 45
           G+  V+ +  + LL+E+D+LIR + EY  K R N
Sbjct: 151 GQQPVSLQEAKLLLKEDDELIREVYEYWIKKRKN 184


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 12  GKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIYLATIADASPTS 71
           G+ ++NQ +       +  + R I+E + KG  + C     V H NL+ LA    A+ T 
Sbjct: 192 GETKMNQRS-----SRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTG 246

Query: 72  TS 73
            +
Sbjct: 247 AA 248


>gi|68163572 hypothetical protein LOC84077 [Homo sapiens]
          Length = 904

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 31  LIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60
           L+  +  +Q +GRG+ C+Q ++  +R L Y
Sbjct: 730 LLNTLYNHQQRGRGSPCIQCRYDSYRLLQY 759


>gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2
           [Homo sapiens]
          Length = 291

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 9   WLRGKAEVNQETIQRLLEENDQLIR 33
           WL  + E NQ+ +Q L +E ++L++
Sbjct: 261 WLEDRLEQNQQHLQELQQEKEELMQ 285


>gi|13236583 BRCA1/BRCA2-containing complex, subunit 3 isoform 1
           [Homo sapiens]
          Length = 316

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 9   WLRGKAEVNQETIQRLLEENDQLIR 33
           WL  + E NQ+ +Q L +E ++L++
Sbjct: 286 WLEDRLEQNQQHLQELQQEKEELMQ 310


>gi|9558729 golgi associated, gamma adaptin ear containing, ARF
           binding protein 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 10  LRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNE 46
           L    E N E +  +L+ ND L + I  Y+   RG E
Sbjct: 266 LASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEE 302


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,710,640
Number of Sequences: 37866
Number of extensions: 92073
Number of successful extensions: 315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 10
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.