Search of human proteins with 186910188

Search of human proteins with 186910188

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|186910188 hypothetical protein LOC100129128 [Homo sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|186910188 hypothetical protein LOC100129128 [Homo sapiens]         270   2e-73
gi|117956389 KH homology domain containing 1 [Homo sapiens]           226   5e-60
gi|122937452 oocyte expressed protein homolog [Homo sapiens]           37   0.003
gi|70608179 developmental pluripotency associated 5 [Homo sapiens]     35   0.012
gi|169171663 PREDICTED: similar to hCG2036731 [Homo sapiens]           28   2.6  
gi|239749177 PREDICTED: similar to hCG2036731 [Homo sapiens]           28   2.6  
gi|169171173 PREDICTED: similar to hCG2036731 [Homo sapiens]           28   2.6  
gi|239508938 PREDICTED: similar to hCG2036731 [Homo sapiens]           28   2.6  
gi|169168288 PREDICTED: hypothetical protein LOC100127206 [Homo ...    27   3.3  
gi|169168099 PREDICTED: hypothetical protein LOC100127206 [Homo ...    27   3.3  
gi|169167518 PREDICTED: hypothetical protein LOC100127206 [Homo ...    27   3.3  
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]         27   4.4  
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]          27   5.7  
gi|62243567 netrin receptor Unc5h1 [Homo sapiens]                      26   7.4  

>gi|186910188 hypothetical protein LOC100129128 [Homo sapiens]
          Length = 128

 Score =  270 bits (691), Expect = 2e-73
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAVGTSALSKEPWWTLPENFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERC 60
           MAVGTSALSKEPWWTLPENFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERC
Sbjct: 1   MAVGTSALSKEPWWTLPENFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERC 60

Query: 61  FTATGQTRVTVVGPPMAKQWLLLMFHCVGSQDSKCHARGLKMLERVRSQPLTNDDLVTSV 120
           FTATGQTRVTVVGPPMAKQWLLLMFHCVGSQDSKCHARGLKMLERVRSQPLTNDDLVTSV
Sbjct: 61  FTATGQTRVTVVGPPMAKQWLLLMFHCVGSQDSKCHARGLKMLERVRSQPLTNDDLVTSV 120

Query: 121 SLPPYTGD 128
           SLPPYTGD
Sbjct: 121 SLPPYTGD 128


>gi|117956389 KH homology domain containing 1 [Homo sapiens]
          Length = 164

 Score =  226 bits (575), Expect = 5e-60
 Identities = 108/128 (84%), Positives = 117/128 (91%)

Query: 1   MAVGTSALSKEPWWTLPENFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERC 60
           M +GTSALSK+PWWTLP+NFH+PMVFHMEEDQEELIFG  DTYLRCIE+HSHTLIQLE  
Sbjct: 1   MDMGTSALSKKPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLESW 60

Query: 61  FTATGQTRVTVVGPPMAKQWLLLMFHCVGSQDSKCHARGLKMLERVRSQPLTNDDLVTSV 120
           FTATGQTRVTVVGP  A+QWLL MF CVGSQDS  HARGL+MLERVRSQPLTNDDLVTS+
Sbjct: 61  FTATGQTRVTVVGPHRARQWLLHMFCCVGSQDSYHHARGLEMLERVRSQPLTNDDLVTSI 120

Query: 121 SLPPYTGD 128
           S+PPYTGD
Sbjct: 121 SVPPYTGD 128


>gi|122937452 oocyte expressed protein homolog [Homo sapiens]
          Length = 149

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 12  PWWTLPENFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERCFTATGQTRVTV 71
           PWW   +    P+VF++E    + +FG D   +  +E  S  L+ ++    +     +TV
Sbjct: 38  PWWFPVQELRDPLVFYLEAWLADELFGPDRAIIPEMEWTSQALLTVD-IVDSGNLVEITV 96

Query: 72  VGPPMAKQWLLLMFHCVG--SQDSKCHARGLKMLER 105
            G P  +  +  M  C+    ++ +  A  +K LE+
Sbjct: 97  FGRPRVQNRVKSMLLCLAWFHREHRARAEKMKHLEK 132


>gi|70608179 developmental pluripotency associated 5 [Homo
          sapiens]
          Length = 116

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 12 PWWTLPENFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERCFTATGQTRVTV 71
          PW  +PE+   P VF ++    + IFG D + +  IE  S  +++L +   ++  T V V
Sbjct: 12 PWVKVPEDLKDPEVFQVQTRLLKAIFGPDGSRIPYIEQVSKAMLEL-KALESSDLTEVVV 70

Query: 72 VGPPMAK---QWLL 82
           G  + K   +W+L
Sbjct: 71 YGSYLYKLRTKWML 84


>gi|169171663 PREDICTED: similar to hCG2036731 [Homo sapiens]
          Length = 503

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 18  ENFHSPMVFHMEEDQEELIFGL----DDTYLRCIELHSHTLIQLERCFT----------- 62
           E+FHS  +F  +  QE L + +    D++  + +E  S +    ++CFT           
Sbjct: 390 ESFHSAQLFSKDSPQEHLSYSIVGEQDESRKKRLEKMSLSSYYFKKCFTDVIRADNHNND 449

Query: 63  ----ATGQTRVTVVGPPMAKQW 80
                T  TR   V  P    W
Sbjct: 450 YFPSVTNITRANQVSRPKGLDW 471


>gi|239749177 PREDICTED: similar to hCG2036731 [Homo sapiens]
          Length = 564

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 18  ENFHSPMVFHMEEDQEELIFGL----DDTYLRCIELHSHTLIQLERCFT----------- 62
           E+FHS  +F  +  QE L + +    D++  + +E  S +    ++CFT           
Sbjct: 390 ESFHSAQLFSKDSPQEHLSYSIVGEQDESRKKRLEKMSLSSYYFKKCFTDVIRADNHNND 449

Query: 63  ----ATGQTRVTVVGPPMAKQW 80
                T  TR   V  P    W
Sbjct: 450 YFPSVTNITRANQVSRPKGLDW 471


>gi|169171173 PREDICTED: similar to hCG2036731 [Homo sapiens]
          Length = 503

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 18  ENFHSPMVFHMEEDQEELIFGL----DDTYLRCIELHSHTLIQLERCFT----------- 62
           E+FHS  +F  +  QE L + +    D++  + +E  S +    ++CFT           
Sbjct: 390 ESFHSAQLFSKDSPQEHLSYSIVGEQDESRKKRLEKMSLSSYYFKKCFTDVIRADNHNND 449

Query: 63  ----ATGQTRVTVVGPPMAKQW 80
                T  TR   V  P    W
Sbjct: 450 YFPSVTNITRANQVSRPKGLDW 471


>gi|239508938 PREDICTED: similar to hCG2036731 [Homo sapiens]
          Length = 503

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 19/82 (23%)

Query: 18  ENFHSPMVFHMEEDQEELIFGL----DDTYLRCIELHSHTLIQLERCFT----------- 62
           E+FHS  +F  +  QE L + +    D++  + +E  S +    ++CFT           
Sbjct: 390 ESFHSAQLFSKDSPQEHLSYSIVGEQDESRKKRLEKMSLSSYYFKKCFTDVIRADNHNND 449

Query: 63  ----ATGQTRVTVVGPPMAKQW 80
                T  TR   V  P    W
Sbjct: 450 YFPSVTNITRANQVSRPKGLDW 471


>gi|169168288 PREDICTED: hypothetical protein LOC100127206 [Homo
           sapiens]
          Length = 190

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 10  KEPWWTLPE----NFHSPMVFHMEEDQEELIFGLDDTY 43
           K P WT+ E    + H+ +  H++E+  +L F L D Y
Sbjct: 108 KNPSWTIEEYDKHSLHTNLSGHLKENPNDLRFWLGDMY 145


>gi|169168099 PREDICTED: hypothetical protein LOC100127206 [Homo
           sapiens]
          Length = 190

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 10  KEPWWTLPE----NFHSPMVFHMEEDQEELIFGLDDTY 43
           K P WT+ E    + H+ +  H++E+  +L F L D Y
Sbjct: 108 KNPSWTIEEYDKHSLHTNLSGHLKENPNDLRFWLGDMY 145


>gi|169167518 PREDICTED: hypothetical protein LOC100127206 [Homo
           sapiens]
          Length = 190

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 10  KEPWWTLPE----NFHSPMVFHMEEDQEELIFGLDDTY 43
           K P WT+ E    + H+ +  H++E+  +L F L D Y
Sbjct: 108 KNPSWTIEEYDKHSLHTNLSGHLKENPNDLRFWLGDMY 145


>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
          Length = 509

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 13  WWTLPE--NFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERCFTAT 64
           +W L    NF+ P++   +++++ L     D   R ++L +H    LER    T
Sbjct: 453 YWKLKRKVNFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVMIDT 506


>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
          Length = 842

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 13  WWTLPE--NFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLER 59
           +W L    NF+ P++   +++++ L     D   R ++L +H    LER
Sbjct: 453 YWKLKRKVNFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLER 501


>gi|62243567 netrin receptor Unc5h1 [Homo sapiens]
          Length = 842

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 27  HMEEDQEELIFGLDDTYLRCIELHSHTLIQLERCFTATGQTRVTVVGPPMAKQ 79
           ++   Q E +FGL++ + +C+   S    + ++ +      R      P+AK+
Sbjct: 107 NVSRQQVEKVFGLEEYWCQCVAWSSSGTTKSQKAYIRIAYLRKNFEQEPLAKE 159


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,467,458
Number of Sequences: 37866
Number of extensions: 220900
Number of successful extensions: 408
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 14
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.