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Search of human proteins with 18087833
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo
sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens] 484 e-137
gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens] 53 2e-07
gi|4505717 peroxisomal biogenesis factor 11 alpha [Homo sapiens] 51 1e-06
gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens] 30 2.5
gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens] 30 2.5
gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens] 29 3.2
gi|4503811 fucosyltransferase 4 [Homo sapiens] 28 5.5
gi|21040343 hemochromatosis protein isoform 4 precursor [Homo sa... 28 7.1
gi|239755473 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1
gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo ... 28 7.1
gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo ... 28 7.1
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 28 7.1
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 28 7.1
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 28 7.1
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 28 7.1
gi|209180457 target of myb1 isoform 2 [Homo sapiens] 28 9.3
gi|209180450 target of myb1 isoform 4 [Homo sapiens] 28 9.3
gi|4885637 target of myb1 isoform 1 [Homo sapiens] 28 9.3
>gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens]
Length = 241
Score = 484 bits (1246), Expect = e-137
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MASLSGLASALESYRGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCR 60
MASLSGLASALESYRGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCR
Sbjct: 1 MASLSGLASALESYRGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCR 60
Query: 61 TILRLFDDLAMFVYTKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVLHV 120
TILRLFDDLAMFVYTKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVLHV
Sbjct: 61 TILRLFDDLAMFVYTKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVLHV 120
Query: 121 DSSRWWTLSTTLWALSLLLGVARSLWMLLKLRQRLRSPTAPFTSPLPRGKRRAMEAQMQS 180
DSSRWWTLSTTLWALSLLLGVARSLWMLLKLRQRLRSPTAPFTSPLPRGKRRAMEAQMQS
Sbjct: 121 DSSRWWTLSTTLWALSLLLGVARSLWMLLKLRQRLRSPTAPFTSPLPRGKRRAMEAQMQS 180
Query: 181 EALSLLSNLADLANAVHWLPRGVLWAGRFPPWLVGLMGTISSILSMYQAARAGGQAEATT 240
EALSLLSNLADLANAVHWLPRGVLWAGRFPPWLVGLMGTISSILSMYQAARAGGQAEATT
Sbjct: 181 EALSLLSNLADLANAVHWLPRGVLWAGRFPPWLVGLMGTISSILSMYQAARAGGQAEATT 240
Query: 241 P 241
P
Sbjct: 241 P 241
>gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]
Length = 259
Score = 53.1 bits (126), Expect = 2e-07
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 42/245 (17%)
Query: 15 RGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCRTILRLFDDLAMFVY 74
+ R+RL R Y C L+G L ++ A E+ ++ + + LS R +LRL +
Sbjct: 12 QARERLCRAAQYACSLLGHAL-QRHGASPELQKQIRQLESHLSLGRKLLRLGNSADALES 70
Query: 75 TKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVL-HVDSSRWWTLSTTLW 133
K+ D +R + +L LY+ C++V WA + + VD +W S +
Sbjct: 71 AKR---AVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWAQRSFRYY 127
Query: 134 ALSLLLGVARSLWMLLKLRQ--------RLR---------SPTAPFTSP-LPRGKRRAME 175
SL++ ++R + + L + RL+ S T P P G +
Sbjct: 128 LFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLA 187
Query: 176 AQMQSEALSL--------------LSNLADLANAVHWLPRGVLWAGRFPPWLVGLMGTIS 221
+++ + L L + N DL ++P L R P +VGL G +S
Sbjct: 188 LKLRLQVLLLARVLRGHPPLLLDVVRNACDL-----FIPLDKLGLWRCGPGIVGLCGLVS 242
Query: 222 SILSM 226
SILS+
Sbjct: 243 SILSI 247
>gi|4505717 peroxisomal biogenesis factor 11 alpha [Homo sapiens]
Length = 247
Score = 50.8 bits (120), Expect = 1e-06
Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 29/236 (12%)
Query: 15 RGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCRTILRLFDDLAMFVY 74
+GRDRL R Y C L+ L+E + +V +L + + +S R RL + +
Sbjct: 12 QGRDRLFRATQYTCMLL-RYLLEPKAGKEKVVMKLKKLESSVSTGRKWFRLGNVVHAIQA 70
Query: 75 TKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVLH-VDSSRWWTLSTTLW 133
T+Q D R L NL +Y+ C+ + W + ++ +W T + +
Sbjct: 71 TEQ---SIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWRTRAAHHY 127
Query: 134 ALSLLLGVARSLWML-LKLRQ----RLRSPTAPFTSPLPRGKRRAMEAQMQSEALSL--- 185
SLLL + R L+ + L++++ R + + PL +QS L L
Sbjct: 128 YYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSFLLLLFRS 187
Query: 186 -----------LSNLADLANAVHWLPRGVLWAGRFPPWLVGLMGTISSILSMYQAA 230
+ NL D+ N P L + P ++GL G +SSI M A
Sbjct: 188 LKQHPPLLLDTVKNLCDILN-----PLDQLGIYKSNPGIIGLGGLVSSIAGMITVA 238
>gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 153 QRLRSPTAPFTSPLPRGKRRAMEAQ-MQSEALSLLSNLADLANAVHWLPR-GVLWAGRFP 210
+ R P F P PR R + + +LL L+ A H LPR VLWA P
Sbjct: 37 EHCRLPRCAFRRP-PRASRHHRQGHALDHRGAALL--LSGEARGFHPLPRLRVLWAASIP 93
Query: 211 PWLVGLMGTISS 222
P L G +SS
Sbjct: 94 PTLQGFPRLLSS 105
>gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 153 QRLRSPTAPFTSPLPRGKRRAMEAQ-MQSEALSLLSNLADLANAVHWLPR-GVLWAGRFP 210
+ R P F P PR R + + +LL L+ A H LPR VLWA P
Sbjct: 37 EHCRLPRCAFRRP-PRASRHHRQGHALDHRGAALL--LSGEARGFHPLPRLRVLWAASIP 93
Query: 211 PWLVGLMGTISS 222
P L G +SS
Sbjct: 94 PTLQGFPRLLSS 105
>gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 3.2
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 156 RSPTAPFTSPLPRGKRRAMEAQ-MQSEALSLLSNLADLANAVHWLPR-GVLWAGRFPPWL 213
R P F P PR R + + +LL L+ A H LPR VLWA PP L
Sbjct: 40 RLPRCAFRRP-PRASRHHRQGHALDHRGAALL--LSGEARGFHPLPRLRVLWAASIPPTL 96
Query: 214 VGLMGTISS 222
G +SS
Sbjct: 97 QGFPRLLSS 105
>gi|4503811 fucosyltransferase 4 [Homo sapiens]
Length = 530
Score = 28.5 bits (62), Expect = 5.5
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 155 LRSPTAPFTSPLPRGKRRAMEAQMQSEALSLLSNLADLANAVHWLPRGVLWAGRFPPW 212
L S TAPF S ++R +E Q+Q E+ S AD A LP + A PW
Sbjct: 77 LHSGTAPFHSRASGERQRRLEPQLQHESRCRSSTPADAWRAEAALPVRAMGA----PW 130
>gi|21040343 hemochromatosis protein isoform 4 precursor [Homo
sapiens]
Length = 256
Score = 28.1 bits (61), Expect = 7.1
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 80 LGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARV----LHVDSSRWWTLSTTLWAL 135
+GA E+D + LG + DQL+ +H + + R + S W LS +L
Sbjct: 35 MGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGW 94
Query: 136 SLLLGVARSLWMLLKLRQRLRSP-----TAPFTSPLPRGKRRAMEAQMQSEALSLLSNLA 190
+ V W +++ + P T TS + + RA+ Q+ + L +
Sbjct: 95 DHMFTV--DFWTIMENHNHSKVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWLKDKQ 152
Query: 191 DLANAVHWLPRGVL--WAGRFPPWL 213
+ +A + P+ VL G + W+
Sbjct: 153 PM-DAKEFEPKDVLPNGDGTYQGWI 176
>gi|239755473 PREDICTED: hypothetical protein [Homo sapiens]
Length = 387
Score = 28.1 bits (61), Expect = 7.1
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 137 LLLGVARSLWMLLKLRQRL------RSPTAPFTSPLPRGKR---RAMEAQM-QSEALSLL 186
+ LGV R LW+ L++RL +P P L RG R RA A+ SEAL LL
Sbjct: 105 IFLGVLRRLWLQRGLQRRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLL 164
Query: 187 SN 188
+
Sbjct: 165 QS 166
>gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo
sapiens]
Length = 387
Score = 28.1 bits (61), Expect = 7.1
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 137 LLLGVARSLWMLLKLRQRL------RSPTAPFTSPLPRGKR---RAMEAQM-QSEALSLL 186
+ LGV R LW+ L++RL +P P L RG R RA A+ SEAL LL
Sbjct: 105 IFLGVLRRLWLQRGLQRRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLL 164
Query: 187 SN 188
+
Sbjct: 165 QS 166
>gi|239744278 PREDICTED: hypothetical protein XP_002343110 [Homo
sapiens]
Length = 387
Score = 28.1 bits (61), Expect = 7.1
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 137 LLLGVARSLWMLLKLRQRL------RSPTAPFTSPLPRGKR---RAMEAQM-QSEALSLL 186
+ LGV R LW+ L++RL +P P L RG R RA A+ SEAL LL
Sbjct: 105 IFLGVLRRLWLQRGLQRRLGFRLGFSAPARPKARRLDRGGRWRCRAFPARKGPSEALYLL 164
Query: 187 SN 188
+
Sbjct: 165 QS 166
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 147 MLLKLRQRLRS-PTAPFTSPLPRGKRRAMEAQMQSE 181
+L LR RLR P+AP +P PR A E Q + E
Sbjct: 483 LLKSLRSRLRDGPSAPLEAPEPRKPVTAQERQRERE 518
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 147 MLLKLRQRLRS-PTAPFTSPLPRGKRRAMEAQMQSE 181
+L LR RLR P+AP +P PR A E Q + E
Sbjct: 483 LLKSLRSRLRDGPSAPLEAPEPRKPVTAQERQRERE 518
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 147 MLLKLRQRLRS-PTAPFTSPLPRGKRRAMEAQMQSE 181
+L LR RLR P+AP +P PR A E Q + E
Sbjct: 483 LLKSLRSRLRDGPSAPLEAPEPRKPVTAQERQRERE 518
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 147 MLLKLRQRLRS-PTAPFTSPLPRGKRRAMEAQMQSE 181
+L LR RLR P+AP +P PR A E Q + E
Sbjct: 344 LLKSLRSRLRDGPSAPLEAPEPRKPVTAQERQRERE 379
>gi|209180457 target of myb1 isoform 2 [Homo sapiens]
Length = 493
Score = 27.7 bits (60), Expect = 9.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 161 PFTSPLPRGKRRAMEAQMQSEALSLLSNLADLANAVHWLPRGVLWA 206
PF+SP+ + +A + +QSE +L + D+ N P+ L A
Sbjct: 8 PFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRA 53
>gi|209180450 target of myb1 isoform 4 [Homo sapiens]
Length = 447
Score = 27.7 bits (60), Expect = 9.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 161 PFTSPLPRGKRRAMEAQMQSEALSLLSNLADLANAVHWLPRGVLWA 206
PF+SP+ + +A + +QSE +L + D+ N P+ L A
Sbjct: 8 PFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRA 53
>gi|4885637 target of myb1 isoform 1 [Homo sapiens]
Length = 492
Score = 27.7 bits (60), Expect = 9.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 161 PFTSPLPRGKRRAMEAQMQSEALSLLSNLADLANAVHWLPRGVLWA 206
PF+SP+ + +A + +QSE +L + D+ N P+ L A
Sbjct: 8 PFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRA 53
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,375,892
Number of Sequences: 37866
Number of extensions: 331617
Number of successful extensions: 1178
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1169
Number of HSP's gapped (non-prelim): 19
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.