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Search of human proteins with 17402884
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17402884 HEAT-like repeat-containing protein isoform 2 [Homo
sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17402884 HEAT-like repeat-containing protein isoform 2 [Homo ... 240 2e-64
gi|17402886 HEAT-like repeat-containing protein isoform 1 [Homo ... 194 1e-50
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 32 0.085
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 32 0.085
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 28 1.2
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 28 1.2
gi|45580730 aminoadipate-semialdehyde dehydrogenase [Homo sapiens] 28 1.6
gi|218505703 von Willebrand factor A domain containing 3A [Homo ... 26 6.1
gi|4557755 microphthalmia-associated transcription factor isofor... 26 7.9
gi|154091312 transient receptor potential cation channel, subfam... 26 7.9
gi|154091308 transient receptor potential cation channel, subfam... 26 7.9
gi|154091310 transient receptor potential cation channel, subfam... 26 7.9
gi|154091320 transient receptor potential cation channel, subfam... 26 7.9
gi|154091318 transient receptor potential cation channel, subfam... 26 7.9
gi|154091316 transient receptor potential cation channel, subfam... 26 7.9
gi|154091314 transient receptor potential cation channel, subfam... 26 7.9
>gi|17402884 HEAT-like repeat-containing protein isoform 2 [Homo
sapiens]
Length = 120
Score = 240 bits (613), Expect = 2e-64
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV 60
MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV
Sbjct: 1 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV 60
Query: 61 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVRVHEDAHLFIQRVWISHMFVQRV 120
YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVRVHEDAHLFIQRVWISHMFVQRV
Sbjct: 61 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVRVHEDAHLFIQRVWISHMFVQRV 120
>gi|17402886 HEAT-like repeat-containing protein isoform 1 [Homo
sapiens]
Length = 873
Score = 194 bits (494), Expect = 1e-50
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV 60
MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV
Sbjct: 1 MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAV 60
Query: 61 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVR 98
YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVR
Sbjct: 61 YLLSAGQDVQGTSVIANLPFLMRQNPTETLRRVLPKVR 98
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 32.3 bits (72), Expect = 0.085
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 12 FSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYLLSAGQDVQG 71
FSQ+ L ME +QE+ + + + S+KT E++ + + ++ + + ++G ++
Sbjct: 1390 FSQDLL---MEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFASGSELH- 1445
Query: 72 TSVIANLPFLMRQN 85
+S+ + + FL +QN
Sbjct: 1446 SSLTSEIHFLRKQN 1459
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 32.3 bits (72), Expect = 0.085
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 12 FSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYLLSAGQDVQG 71
FSQ+ L ME +QE+ + + + S+KT E++ + + ++ + + ++G ++
Sbjct: 1390 FSQDLL---MEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFASGSELH- 1445
Query: 72 TSVIANLPFLMRQN 85
+S+ + + FL +QN
Sbjct: 1446 SSLTSEIHFLRKQN 1459
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform 1
[Homo sapiens]
Length = 1722
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 24 LQELTIIERPVRRSLKTPE--EIERLTVDED-LSDIERAVYLLSAGQDVQGTSVIANLPF 80
LQ +TI + + + + +E+L V + LSD++ A+ A + S+ N P
Sbjct: 1061 LQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLHELSLTGN-PL 1119
Query: 81 LMRQNPTETLRRVLPKVRV 99
L N ++L +VLP +R+
Sbjct: 1120 LQETNWRDSLLKVLPALRI 1138
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform 2
[Homo sapiens]
Length = 1336
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 24 LQELTIIERPVRRSLKTPE--EIERLTVDED-LSDIERAVYLLSAGQDVQGTSVIANLPF 80
LQ +TI + + + + +E+L V + LSD++ A+ A + S+ N P
Sbjct: 1061 LQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLHELSLTGN-PL 1119
Query: 81 LMRQNPTETLRRVLPKVRV 99
L N ++L +VLP +R+
Sbjct: 1120 LQETNWRDSLLKVLPALRI 1138
>gi|45580730 aminoadipate-semialdehyde dehydrogenase [Homo sapiens]
Length = 1098
Score = 28.1 bits (61), Expect = 1.6
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 13 SQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDL-----SDIERAVYLLSAGQ 67
S+N L G EDL E ++ + +L PE++ R+ DE L D +++ LLS +
Sbjct: 545 SENKLSG-KEDLWEK--LQYLWKSTLNLPEDLLRVP-DESLFLNSGGDSLKSIRLLSEIE 600
Query: 68 DVQGTSVIANLPFLMRQNPTETLRRVLPKVRVHED 102
+ GTSV L ++ + E +L V ED
Sbjct: 601 KLVGTSVPGLLEIILSSSILEIYNHILQTVVPDED 635
>gi|218505703 von Willebrand factor A domain containing 3A [Homo
sapiens]
Length = 1184
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 49 VDEDLSDIERAVYLLSAGQDVQGTSVIANLPFLMRQNPTE----TLRRVLPKVRVHEDAH 104
+DE L++I++A LLS Q +Q +S L M + TE L +LPK H DA
Sbjct: 337 MDELLAEIQKAQSLLSHVQALQHSSPCEALTCTMEEISTEITNGPLISLLPKPPKH-DAP 395
Query: 105 LFIQ 108
L I+
Sbjct: 396 LTIE 399
>gi|4557755 microphthalmia-associated transcription factor isoform 4
[Homo sapiens]
Length = 419
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 76 ANLPFLMRQN-----PTETLRRVLPKVRVHEDAHLFIQR 109
ANLP + R+ PTE+ R L K R +D H I+R
Sbjct: 176 ANLPNIKRELTACIFPTESEARALAKERQKKDNHNLIER 214
>gi|154091312 transient receptor potential cation channel, subfamily
M, member 3 isoform b [Homo sapiens]
Length = 1566
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 PPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYL 62
PP +++F YM QE+ + E K EE E+ T +++ D+E L
Sbjct: 641 PPSILSLEFKNKDDMPYMSQAQEIHLQE-------KEAEEPEKPTKEKEEEDMELTAML 692
>gi|154091308 transient receptor potential cation channel, subfamily
M, member 3 isoform f [Homo sapiens]
Length = 1579
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 PPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYL 62
PP +++F YM QE+ + E K EE E+ T +++ D+E L
Sbjct: 654 PPSILSLEFKNKDDMPYMSQAQEIHLQE-------KEAEEPEKPTKEKEEEDMELTAML 705
>gi|154091310 transient receptor potential cation channel, subfamily
M, member 3 isoform g [Homo sapiens]
Length = 1569
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 PPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYL 62
PP +++F YM QE+ + E K EE E+ T +++ D+E L
Sbjct: 644 PPSILSLEFKNKDDMPYMSQAQEIHLQE-------KEAEEPEKPTKEKEEEDMELTAML 695
>gi|154091320 transient receptor potential cation channel, subfamily
M, member 3 isoform a [Homo sapiens]
Length = 1554
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 PPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYL 62
PP +++F YM QE+ + E K EE E+ T +++ D+E L
Sbjct: 629 PPSILSLEFKNKDDMPYMSQAQEIHLQE-------KEAEEPEKPTKEKEEEDMELTAML 680
>gi|154091318 transient receptor potential cation channel, subfamily
M, member 3 isoform d [Homo sapiens]
Length = 1544
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 PPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYL 62
PP +++F YM QE+ + E K EE E+ T +++ D+E L
Sbjct: 619 PPSILSLEFKNKDDMPYMSQAQEIHLQE-------KEAEEPEKPTKEKEEEDMELTAML 670
>gi|154091316 transient receptor potential cation channel, subfamily
M, member 3 isoform e [Homo sapiens]
Length = 1556
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 PPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYL 62
PP +++F YM QE+ + E K EE E+ T +++ D+E L
Sbjct: 631 PPSILSLEFKNKDDMPYMSQAQEIHLQE-------KEAEEPEKPTKEKEEEDMELTAML 682
>gi|154091314 transient receptor potential cation channel, subfamily
M, member 3 isoform k [Homo sapiens]
Length = 1707
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 4 PPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYL 62
PP +++F YM QE+ + E K EE E+ T +++ D+E L
Sbjct: 782 PPSILSLEFKNKDDMPYMSQAQEIHLQE-------KEAEEPEKPTKEKEEEDMELTAML 833
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,946,055
Number of Sequences: 37866
Number of extensions: 186070
Number of successful extensions: 392
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 16
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.