Search of human proteins with 169218088

Search of human proteins with 169218088

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169218088 PREDICTED: similar to SAPS domain family, member 2
[Homo sapiens]
         (79 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169218088 PREDICTED: similar to SAPS domain family, member 2 ...   155   9e-39
gi|37537701 SAPS domain family, member 2 [Homo sapiens]                92   9e-20
gi|13489083 SAPS domain family, member 3 [Homo sapiens]                76   7e-15
gi|151101459 SAPS domain family, member 1 [Homo sapiens]               70   3e-13
gi|239754971 PREDICTED: similar to spermatogenesis and centriole...    27   2.7  
gi|239743652 PREDICTED: hypothetical protein XP_002342922 [Homo ...    27   2.7  
gi|239753524 PREDICTED: hypothetical protein [Homo sapiens]            26   6.0  
gi|239748138 PREDICTED: hypothetical protein XP_002346536 [Homo ...    26   6.0  
gi|239742036 PREDICTED: hypothetical protein XP_002342376 [Homo ...    26   6.0  
gi|66571327 ring finger protein 213 [Homo sapiens]                     26   6.0  
gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo s...    26   7.9  
gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens]    26   7.9  

>gi|169218088 PREDICTED: similar to SAPS domain family, member 2
          [Homo sapiens]
          Length = 79

 Score =  155 bits (391), Expect = 9e-39
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQACA 60
          MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQACA
Sbjct: 1  MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQACA 60

Query: 61 ARSPTAAGQGAREGKSSLS 79
          ARSPTAAGQGAREGKSSLS
Sbjct: 61 ARSPTAAGQGAREGKSSLS 79


>gi|37537701 SAPS domain family, member 2 [Homo sapiens]
          Length = 932

 Score = 92.0 bits (227), Expect = 9e-20
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1   MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDED 44
           MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDED
Sbjct: 163 MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDED 206


>gi|13489083 SAPS domain family, member 3 [Homo sapiens]
          Length = 793

 Score = 75.9 bits (185), Expect = 7e-15
 Identities = 33/44 (75%), Positives = 41/44 (93%)

Query: 1   MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDED 44
           MDLLLRL++C+EP   RQDVL+WLNEEK+IQRLVE++HPSQ+ED
Sbjct: 163 MDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEED 206


>gi|151101459 SAPS domain family, member 1 [Homo sapiens]
          Length = 881

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 31/44 (70%), Positives = 40/44 (90%)

Query: 1   MDLLLRLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDED 44
           MDLLLRL++CVE   LRQDV++WLNEEK++QRL+E IHPS+DE+
Sbjct: 163 MDLLLRLLTCVERPQLRQDVVNWLNEEKIVQRLIEQIHPSKDEN 206


>gi|239754971 PREDICTED: similar to spermatogenesis and centriole
          associated 1 [Homo sapiens]
          Length = 132

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 15 GLRQDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQACAA 61
          GLRQ++     E + ++RLV+LI   +++++ ++L    +S+  C++
Sbjct: 9  GLRQEIQRLAQENEELRRLVQLI--QENQELKLVLRNRGSSLGFCSS 53


>gi|239743652 PREDICTED: hypothetical protein XP_002342922 [Homo
          sapiens]
          Length = 132

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 15 GLRQDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQACAA 61
          GLRQ++     E + ++RLV+LI   +++++ ++L    +S+  C++
Sbjct: 9  GLRQEIQRLAQENEELRRLVQLI--QENQELKLVLRNRGSSLGFCSS 53


>gi|239753524 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 18 QDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQA 58
          Q+  +W +       L+    P+ +  V VL T LR +VQA
Sbjct: 15 QNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQA 55


>gi|239748138 PREDICTED: hypothetical protein XP_002346536 [Homo
          sapiens]
          Length = 151

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 18 QDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQA 58
          Q+  +W +       L+    P+ +  V VL T LR +VQA
Sbjct: 15 QNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQA 55


>gi|239742036 PREDICTED: hypothetical protein XP_002342376 [Homo
          sapiens]
          Length = 151

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 18 QDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQA 58
          Q+  +W +       L+    P+ +  V VL T LR +VQA
Sbjct: 15 QNRAYWFSSRICSMMLMRFSRPNTEHHVQVLETHLRPAVQA 55


>gi|66571327 ring finger protein 213 [Homo sapiens]
          Length = 3280

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 7   LVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQ 57
           L+  V   G   DV   L  ++++QRLVE I  S DE+ + ++TE+  + Q
Sbjct: 648 LIPLVWDFGQLSDVAEKLYIQQIVQRLVESI--SLDENGTRVITEVLCASQ 696


>gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo
           sapiens]
          Length = 691

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 6   RLVSCVEPAGLRQDVLHWLNEEKVIQRLVELIHPSQDEDVSVLLTELRASVQACAARSPT 65
           RL    EP  + +++    NE K   +L + +   Q++   V  TE  A  +  AAR P 
Sbjct: 474 RLQQLAEPQSIFKELN---NENKSALQLEQQVKELQEKLGEVKDTETSAQKEPEAARGPG 530

Query: 66  AAGQGAREGKSS 77
           A G G   G+SS
Sbjct: 531 APGPG---GESS 539


>gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens]
          Length = 1200

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 7   LVSCVEPAGLRQDVLHWLN 25
           L+ C  P G++Q +LHW++
Sbjct: 652 LLGCPVPLGVKQKLLHWVS 670


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,861,191
Number of Sequences: 37866
Number of extensions: 93452
Number of successful extensions: 313
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 12
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.