Guide to the Human Genome
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Name: LOC652875 Sequence: fasta or formatted (79aa) NCBI GI: 169218088
Description:

PREDICTED: similar to SAPS domain family, member 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1          8           2
 C cysteine            2.5          2           1
 D aspartate           5.1          4           1
 E glutamate           8.9          7           2
 F phenylalanine       0.0          0           0
 G glycine             5.1          4           1
 H histidine           2.5          2           1
 I isoleucine          2.5          2           1
 K lysine              2.5          2           1
 L leucine            16.5         13           3
 M methionine          1.3          1           1
 N asparagine          1.3          1           1
 P proline             3.8          3           1
 Q glutamine           6.3          5           1
 R arginine            7.6          6           1
 S serine             10.1          8           2
 T threonine           2.5          2           1
 V valine             10.1          8           1
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SAPS domain family, member 2 ... 
SAPS2                 0.515   SAPS domain family, member 2 
SAPS3                 0.392   SAPS domain family, member 3 
SAPS1                 0.346   SAPS domain family, member 1 
LOC100292286          0.015   PREDICTED: similar to spermatogenesis and centriole...
LOC100288424          0.015   PREDICTED: hypothetical protein XP_002342922 
LOC100294011          0.008   PREDICTED: hypothetical protein 
LOC100289839          0.008   PREDICTED: hypothetical protein XP_002346536 
LOC100287546          0.008   PREDICTED: hypothetical protein XP_002342376 
RNF213                0.008   ring finger protein 213 
LOC390561             0.008   PREDICTED: similar to hect domain and RLD 2 
NLRP5                 0.008   NACHT, LRR and PYD containing protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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