Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169218000
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169218000 PREDICTED: hypothetical protein [Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169162244 PREDICTED: hypothetical protein [Homo sapiens] 436 e-123
gi|169162242 PREDICTED: hypothetical protein [Homo sapiens] 436 e-123
gi|169218000 PREDICTED: hypothetical protein [Homo sapiens] 436 e-123
gi|169162563 PREDICTED: hypothetical protein [Homo sapiens] 436 e-123
gi|169162561 PREDICTED: hypothetical protein [Homo sapiens] 436 e-123
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 33 0.14
gi|51510893 hemoglobin mu chain [Homo sapiens] 31 0.88
gi|39753953 zinc finger protein 800 [Homo sapiens] 30 1.1
gi|38348376 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran... 30 2.0
gi|16418459 interleukin 22-binding protein isoform 1 [Homo sapiens] 29 3.3
gi|38569471 MUF1 protein [Homo sapiens] 29 3.3
gi|12597625 activating transcription factor 5 [Homo sapiens] 28 5.7
gi|133505169 macrophage expressed gene 1 [Homo sapiens] 28 7.4
gi|157694487 CMT1A duplicated region transcript 1 [Homo sapiens] 28 7.4
gi|132566536 voltage-gated calcium channel alpha(2)delta-4 subun... 27 9.7
>gi|169162244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 436 bits (1120), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE
Sbjct: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
Query: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS
Sbjct: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
Query: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP
Sbjct: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
Query: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG
Sbjct: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
>gi|169162242 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 436 bits (1120), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE
Sbjct: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
Query: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS
Sbjct: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
Query: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP
Sbjct: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
Query: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG
Sbjct: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
>gi|169218000 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 436 bits (1120), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE
Sbjct: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
Query: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS
Sbjct: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
Query: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP
Sbjct: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
Query: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG
Sbjct: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
>gi|169162563 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 436 bits (1120), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE
Sbjct: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
Query: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS
Sbjct: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
Query: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP
Sbjct: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
Query: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG
Sbjct: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
>gi|169162561 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 436 bits (1120), Expect = e-123
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE
Sbjct: 1 MCIVMCKYYATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHE 60
Query: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS
Sbjct: 61 KAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVAS 120
Query: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP
Sbjct: 121 RVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLP 180
Query: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG
Sbjct: 181 GVLRPDTGQSHYRIRKPRLGSEFSRGLWRSG 211
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 33.5 bits (75), Expect = 0.14
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 10 ATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHEKAW-QHAE 67
+TFY + E+PG +Y++ T P S LP+E +S + L D G V ++ QH E
Sbjct: 1095 STFYSQREKPGIFYQQ---TLPESHLPKEALKISVAPGLADQKTGTPTVTSTSYSQHRE 1150
Score = 28.5 bits (62), Expect = 4.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 10 ATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADVHEKAWQHAE 67
+TFY + E+PG +Y++ T P S +P E VS D G ++ H E
Sbjct: 1190 STFYSQREKPGIFYQQ---TLPGSHIPEEAQKVSPVLGPADQKTGTPTPTSASYSHTE 1244
Score = 27.7 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 10 ATFYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLG 54
+TFY E+PG +Y++ P S LP E VS + D +G
Sbjct: 1427 STFYSHTEKPGSFYQQ---VLPHSHLPEEALEVSVAPGPVDQTIG 1468
>gi|51510893 hemoglobin mu chain [Homo sapiens]
Length = 141
Score = 30.8 bits (68), Expect = 0.88
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 146 IKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLPGVL 183
+ + AL P++ LH L LR+ P FPL +QC VL
Sbjct: 73 VDNLRAALSPLADLHALVLRVDPANFPLL-IQCFHVVL 109
>gi|39753953 zinc finger protein 800 [Homo sapiens]
Length = 664
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 2 CIVMCKYYAT---FYERLEQPGFWYRRGPWTNPLSVLPRENCFVSSSTALTDSVLGFADV 58
C V CK +AT ++ RR T ++ P + F+ S + F
Sbjct: 289 CPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSISPKKS----FKTR 344
Query: 59 HEKAWQHAETNFPRARILLCELKYSGSVQQNR 90
+K+ AE N + LLC+ KYS + R
Sbjct: 345 KQKSSSKAEYNLTACKCLLCKRKYSSQIMLKR 376
>gi|38348376 UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 8 [Homo
sapiens]
Length = 397
Score = 29.6 bits (65), Expect = 2.0
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 92 WSQELWRTCSLPSSLGAQIPG------AAALEVASRVSTSSSERRFL 132
W+Q+ WR SLPS + G AAA E+ S RRFL
Sbjct: 73 WNQQQWRLGSLPSGDSTETGGCQAWGAAAATEIPDFASYPKDLRRFL 119
>gi|16418459 interleukin 22-binding protein isoform 1 [Homo sapiens]
Length = 263
Score = 28.9 bits (63), Expect = 3.3
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 59 HEK---AWQHAETNFPRARILLCELKYSGSVQQNR--AW-SQELWRTCSLPSSLG-AQIP 111
H+K WQH NFP R L KY +N+ W +QEL +C L S Q P
Sbjct: 76 HQKPSGCWQHISCNFPGCRTL---AKYGQRQWKNKEDCWGTQEL--SCDLTSETSDIQEP 130
Query: 112 GAAALEVASRVSTS--SSERRFLKLYISTALNPLVGIKSCAGALLPV 156
+ AS S S S RF + + P++ I G+LL +
Sbjct: 131 YYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVI 177
>gi|38569471 MUF1 protein [Homo sapiens]
Length = 812
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 37 RENCFVSSSTALTDSVLGFADVHEKAWQHAETNFPR----ARILLCELKYSGSVQQ 88
R+N V + ++G ++ E + E FPR A +L LK SGS+QQ
Sbjct: 563 RDNPGVPGNAGPPSHIIGDEEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQ 618
>gi|12597625 activating transcription factor 5 [Homo sapiens]
Length = 282
Score = 28.1 bits (61), Expect = 5.7
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 152 ALLPVSGLHLL--FLRLPPETFPLASVQCLPGVL 183
ALLP SGL L + +LPP PLA + L G L
Sbjct: 14 ALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGAL 47
>gi|133505169 macrophage expressed gene 1 [Homo sapiens]
Length = 716
Score = 27.7 bits (60), Expect = 7.4
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 56 ADVHEKAWQHAETNFPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAA 115
+ +HE+ + H E + ++ C+ Q +A + W S +Q+P +
Sbjct: 423 SQIHEEGYNHLECHRKCTLLVFCKTVCEDVFQVAKAEFRAFWCVAS------SQVPENSG 476
Query: 116 LEVASRVSTSSSERRFLKLYISTALNPLVGIKSCAGALLPV 156
L F L+ S ++NP+ +SC P+
Sbjct: 477 L-------------LFGGLFSSKSINPMTNAQSCPAGYFPL 504
>gi|157694487 CMT1A duplicated region transcript 1 [Homo sapiens]
Length = 752
Score = 27.7 bits (60), Expect = 7.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 137 STALNPLVGIKSCAGALLPVSGLHLLFLRLPPETFPLASVQCLPGVLRPDTGQSH 191
+TA + CA L ++G LP P+A+VQ + G + P T +H
Sbjct: 693 ATAQGGNASLTECAHVRLHIAG------HLPASRLPVAAVQPMTGGMAPTTAPTH 741
>gi|132566536 voltage-gated calcium channel alpha(2)delta-4 subunit
[Homo sapiens]
Length = 1137
Score = 27.3 bits (59), Expect = 9.7
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 70 FPRARILLCELKYSGSVQQNRAWSQELWRTCSLPSSLGAQIPGAAALEVASRVSTSSSER 129
FP E+KY+ SV+ +R SQ+L R P S A P A + TS+S
Sbjct: 1064 FPPVLQEATEVKYNASVKCDRMRSQKLRRR---PDSCHAFHPEENAQDCGGASDTSASP- 1119
Query: 130 RFLKLYISTALNPLVGIKSCAGALLP 155
PL+ + CA LLP
Sbjct: 1120 ------------PLLLLPVCAWGLLP 1133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,993,311
Number of Sequences: 37866
Number of extensions: 390680
Number of successful extensions: 750
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 19
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.