Search of human proteins with 169217000

Search of human proteins with 169217000

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169217000 PREDICTED: similar to pro-pol protein [Homo
sapiens]
         (310 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169217000 PREDICTED: similar to pro-pol protein [Homo sapiens]     627   e-180
gi|169216817 PREDICTED: similar to pro-pol protein [Homo sapiens]     627   e-180
gi|199562283 retrotransposon-like 1 [Homo sapiens]                     44   2e-04
gi|126723547 hypothetical protein LOC57523 [Homo sapiens]              39   0.004
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s...    34   0.19 
gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo sap...    32   0.72 
gi|40806209 WW domain containing E3 ubiquitin protein ligase 2 i...    29   4.7  
gi|40806207 WW domain containing E3 ubiquitin protein ligase 2 i...    29   4.7  
gi|188528641 SEC14 and spectrin domains 1 [Homo sapiens]               29   6.1  
gi|91982772 mucin 17 [Homo sapiens]                                    29   6.1  
gi|27777671 keratinocyte associated protein 3 [Homo sapiens]           29   6.1  

>gi|169217000 PREDICTED: similar to pro-pol protein [Homo sapiens]
          Length = 310

 Score =  627 bits (1617), Expect = e-180
 Identities = 310/310 (100%), Positives = 310/310 (100%)

Query: 1   MPNLYTLLSSIPSSTTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTDLDTHQSQQLTWAVL 60
           MPNLYTLLSSIPSSTTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTDLDTHQSQQLTWAVL
Sbjct: 1   MPNLYTLLSSIPSSTTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTDLDTHQSQQLTWAVL 60

Query: 61  PQDFRDSPHYFSQALSNDLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFK 120
           PQDFRDSPHYFSQALSNDLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFK
Sbjct: 61  PQDFRDSPHYFSQALSNDLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFK 120

Query: 121 GYRVSPSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYF 180
           GYRVSPSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYF
Sbjct: 121 GYRVSPSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYF 180

Query: 181 HLWIPGFAILTKPLYKLKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSL 240
           HLWIPGFAILTKPLYKLKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSL
Sbjct: 181 HLWIPGFAILTKPLYKLKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSL 240

Query: 241 HTAEVQGCAVGILTQGLGPCPVAFLSKQLDLTVLGWPSCLRVASDPIALDNAYADKVVRQ 300
           HTAEVQGCAVGILTQGLGPCPVAFLSKQLDLTVLGWPSCLRVASDPIALDNAYADKVVRQ
Sbjct: 241 HTAEVQGCAVGILTQGLGPCPVAFLSKQLDLTVLGWPSCLRVASDPIALDNAYADKVVRQ 300

Query: 301 ATSIPTSVPQ 310
           ATSIPTSVPQ
Sbjct: 301 ATSIPTSVPQ 310


>gi|169216817 PREDICTED: similar to pro-pol protein [Homo sapiens]
          Length = 310

 Score =  627 bits (1617), Expect = e-180
 Identities = 310/310 (100%), Positives = 310/310 (100%)

Query: 1   MPNLYTLLSSIPSSTTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTDLDTHQSQQLTWAVL 60
           MPNLYTLLSSIPSSTTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTDLDTHQSQQLTWAVL
Sbjct: 1   MPNLYTLLSSIPSSTTHYSVLDLKDAFFTIPLHSSSQPLFAFTWTDLDTHQSQQLTWAVL 60

Query: 61  PQDFRDSPHYFSQALSNDLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFK 120
           PQDFRDSPHYFSQALSNDLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFK
Sbjct: 61  PQDFRDSPHYFSQALSNDLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFK 120

Query: 121 GYRVSPSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYF 180
           GYRVSPSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYF
Sbjct: 121 GYRVSPSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYF 180

Query: 181 HLWIPGFAILTKPLYKLKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSL 240
           HLWIPGFAILTKPLYKLKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSL
Sbjct: 181 HLWIPGFAILTKPLYKLKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSL 240

Query: 241 HTAEVQGCAVGILTQGLGPCPVAFLSKQLDLTVLGWPSCLRVASDPIALDNAYADKVVRQ 300
           HTAEVQGCAVGILTQGLGPCPVAFLSKQLDLTVLGWPSCLRVASDPIALDNAYADKVVRQ
Sbjct: 241 HTAEVQGCAVGILTQGLGPCPVAFLSKQLDLTVLGWPSCLRVASDPIALDNAYADKVVRQ 300

Query: 301 ATSIPTSVPQ 310
           ATSIPTSVPQ
Sbjct: 301 ATSIPTSVPQ 310


>gi|199562283 retrotransposon-like 1 [Homo sapiens]
          Length = 1358

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 78  DLLSFHPSASHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFKGYRVSPSKAQISSPSIT 137
           D+L F      ++ Y   +L+ S S E    H   VL          S  K+Q    ++ 
Sbjct: 722 DMLGFF-----VLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVE 776

Query: 138 HLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYFHLWIPGFAILTKPLYK- 196
            LG +       L  N + +I+  PTP +K  L  F+  V  +  ++  F+I+ +PL + 
Sbjct: 777 FLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQ 836

Query: 197 -LKKGNLADPIDPKSFPHSSFHSLKTALDTASTLALPDSSQPFSLHTAEVQGCAV 250
            L        ++ +     +F  LK A   A  L  P    PF L T  V G A+
Sbjct: 837 LLSSYQFYWGVEEQ----EAFECLKRAFRKAPLLHHPKPQNPFYLETG-VTGTAL 886


>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
          Length = 1898

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 158  ISQTPTPSTKQQLLFFLGMVGYFHLWIPGFAILTKPLYKLKKGNLADPIDPKSFPHSSFH 217
            ++Q   PS    L FF+G +      IP +  L  PL+ L K       D +     +F 
Sbjct: 1082 LAQLTIPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSLLKQKPDWQWDQEH--EEAFL 1139

Query: 218  SLKTALDTASTLALPDSSQPFSLHTAEVQGCAVGILTQGLG--PCPVAFLSKQL 269
            +LK AL +A  L  P+S  PF L           IL Q       P+A+ SK L
Sbjct: 1140 ALKRALVSALCLMAPNSQLPFRLEVTVSHVALTAILHQEHSGRKHPIAYTSKPL 1193


>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
            sapiens]
          Length = 1292

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 18/127 (14%)

Query: 125  SPSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQLLFFLGMVGYFHLWI 184
            SPS++  +SP  +    +     S+LP +R R +S      T + +   +G+ G   L  
Sbjct: 945  SPSRSATASPQFSSHSKLITPAPSSLPHSR-RALSPEMHAVTSEWISLTVGVPGRRSL-- 1001

Query: 185  PGFAILTKPLYKLKKGNL-----------ADPIDPKSFPHSSFHSLKTALDTASTLALPD 233
                 LT PL  L + ++           A P    S PH S+    T    AS LALP 
Sbjct: 1002 ----ALTPPLPPLPEASIYNTDHLALSPRASPSLSLSLPHLSWSDRPTPRSVASPLALPS 1057

Query: 234  SSQPFSL 240
              + +SL
Sbjct: 1058 PHKTYSL 1064


>gi|38488692 SH3 domain and tetratricopeptide repeats 2 [Homo
           sapiens]
          Length = 1288

 Score = 32.0 bits (71), Expect = 0.72
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 87  SHLIQYIDGLLLCSPSFESSQQHTLLVLQHLFFKGYRV--SPSKAQISSPSI-THLGIIR 143
           S L++    LL C P  ESS +H L V+ ++  +G  V  SP +A+    +I   L + R
Sbjct: 589 SALLEKAGALLACLPDRESSAKHELDVVAYVLRQGIVVGSSPLEARACFLAIRLLLSLGR 648

Query: 144 HENTSALP-ANRVRLISQTPTPS 165
           HE    LP A R++L+S  P  S
Sbjct: 649 HE--EVLPFAERLQLLSGHPPAS 669


>gi|40806209 WW domain containing E3 ubiquitin protein ligase 2
           isoform 3 [Homo sapiens]
          Length = 335

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 126 PSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQL 170
           PS   ++SP    L +  + NT++LPA       + P+ S  QQL
Sbjct: 248 PSVVGVTSPPAAPLSVTPNPNTTSLPAPATPAEGEEPSTSGTQQL 292


>gi|40806207 WW domain containing E3 ubiquitin protein ligase 2
           isoform 1 [Homo sapiens]
          Length = 870

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 126 PSKAQISSPSITHLGIIRHENTSALPANRVRLISQTPTPSTKQQL 170
           PS   ++SP    L +  + NT++LPA       + P+ S  QQL
Sbjct: 248 PSVVGVTSPPAAPLSVTPNPNTTSLPAPATPAEGEEPSTSGTQQL 292


>gi|188528641 SEC14 and spectrin domains 1 [Homo sapiens]
          Length = 696

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 71  FSQALSNDLLSFHPSASHLIQYIDGLL--LC---SPSFESSQQHTLLVLQ 115
           F Q L    L FH  A  L Q +DGLL  LC   +P+  +S Q TL +L+
Sbjct: 372 FRQNLLQAALEFHGVAQDLSQQLDGLLGMLCVDVAPADGASIQQTLKLLE 421


>gi|91982772 mucin 17 [Homo sapiens]
          Length = 4493

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 212  PHSSFHSLKTALDTASTLALPDSSQPFSLHT------AEVQGCAVGILTQGLGPCPVAFL 265
            P S+     +A+ T ST  + D+S P +  T         +G ++   T   G  P+ ++
Sbjct: 3111 PVSTTPVTSSAISTLSTTPV-DTSTPVTTSTEAHSSPTTSEGTSMPTSTPSEGSTPLTYM 3169

Query: 266  SKQLDLTVLGWPSCLRVA----SDPIALDNAYADKVVRQATSIPTSVP 309
                 L V    S L       S P+            + TSIPTS P
Sbjct: 3170 PVSTMLVVSSEDSTLSATPVDTSTPVTTSTEATSSTTAEGTSIPTSTP 3217


>gi|27777671 keratinocyte associated protein 3 [Homo sapiens]
          Length = 240

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 224 DTASTLALPDSSQPFSLHTAEVQG-CAVGILT-QGLGPCPVAFLSKQL-DLTVLGWPSCL 280
           DTA  L +P  S   S   A + G C V  LT +G+GPC    L  QL ++T L  P C 
Sbjct: 161 DTALALWIP--SLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCK 218

Query: 281 RVASDPIALDN 291
           R  ++ +   N
Sbjct: 219 RQENEQLLDQN 229


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,288,096
Number of Sequences: 37866
Number of extensions: 561089
Number of successful extensions: 1181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 15
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.