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Search of human proteins with 169216631
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene
family [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene f... 472 e-133
gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene f... 472 e-133
gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene f... 472 e-133
gi|28173554 histone cluster 3, H2bb [Homo sapiens] 40 0.002
gi|4504259 histone cluster 1, H2bl [Homo sapiens] 40 0.002
gi|4504277 histone cluster 2, H2be [Homo sapiens] 39 0.005
gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens] 39 0.005
gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens] 39 0.005
gi|20336754 histone cluster 1, H2bj [Homo sapiens] 39 0.005
gi|10800138 histone cluster 1, H2bd [Homo sapiens] 39 0.005
gi|18105048 histone cluster 1, H2bk [Homo sapiens] 39 0.005
gi|16306566 histone cluster 1, H2bo [Homo sapiens] 39 0.005
gi|4504269 histone cluster 1, H2bh [Homo sapiens] 39 0.005
gi|4504263 histone cluster 1, H2bm [Homo sapiens] 39 0.005
gi|20336752 histone cluster 1, H2bd [Homo sapiens] 39 0.005
gi|4504261 histone cluster 1, H2bn [Homo sapiens] 39 0.005
gi|10800140 histone cluster 1, H2bb [Homo sapiens] 39 0.005
gi|21396484 histone cluster 1, H2be [Homo sapiens] 39 0.005
gi|4504265 histone cluster 1, H2bf [Homo sapiens] 39 0.005
gi|4504257 histone cluster 1, H2bg [Homo sapiens] 39 0.005
gi|21166389 histone cluster 1, H2bc [Homo sapiens] 39 0.005
gi|4504271 histone cluster 1, H2bi [Homo sapiens] 39 0.005
gi|24586679 histone cluster 1, H2ba [Homo sapiens] 38 0.006
gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ... 33 0.20
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.57
gi|21265080 mitochondrial ribosomal protein L18 [Homo sapiens] 32 0.57
gi|83776598 virus-induced signaling adapter [Homo sapiens] 31 0.98
gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens] 30 1.7
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 1.7
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens] 30 1.7
>gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene
family [Homo sapiens]
Length = 224
Score = 472 bits (1214), Expect = e-133
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60
MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI
Sbjct: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60
Query: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120
TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN
Sbjct: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120
Query: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180
LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS
Sbjct: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180
Query: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224
THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV
Sbjct: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224
>gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene
family [Homo sapiens]
Length = 224
Score = 472 bits (1214), Expect = e-133
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60
MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI
Sbjct: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60
Query: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120
TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN
Sbjct: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120
Query: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180
LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS
Sbjct: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180
Query: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224
THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV
Sbjct: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224
>gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene
family [Homo sapiens]
Length = 224
Score = 472 bits (1214), Expect = e-133
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60
MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI
Sbjct: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60
Query: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120
TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN
Sbjct: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120
Query: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180
LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS
Sbjct: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180
Query: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224
THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV
Sbjct: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224
>gi|28173554 histone cluster 3, H2bb [Homo sapiens]
Length = 126
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I ++A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIASEA 78
>gi|4504259 histone cluster 1, H2bl [Homo sapiens]
Length = 126
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I ++A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIASEA 78
>gi|4504277 histone cluster 2, H2be [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens]
Length = 134
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|20336754 histone cluster 1, H2bj [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|10800138 histone cluster 1, H2bd [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|18105048 histone cluster 1, H2bk [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|16306566 histone cluster 1, H2bo [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|4504269 histone cluster 1, H2bh [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|4504263 histone cluster 1, H2bm [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|20336752 histone cluster 1, H2bd [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|4504261 histone cluster 1, H2bn [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|10800140 histone cluster 1, H2bb [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|21396484 histone cluster 1, H2be [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|4504265 histone cluster 1, H2bf [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|4504257 histone cluster 1, H2bg [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|21166389 histone cluster 1, H2bc [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|4504271 histone cluster 1, H2bi [Homo sapiens]
Length = 126
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + +GIMN F+ DIFE I +A
Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78
>gi|24586679 histone cluster 1, H2ba [Homo sapiens]
Length = 127
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64
VLKQ HPD + + IMN F+ DIFE I ++A
Sbjct: 46 VLKQVHPDTGISSKAMSIMNSFVTDIFERIASEA 79
>gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo
sapiens]
Length = 1048
Score = 33.1 bits (74), Expect = 0.20
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 114 AVDPSQNLGLALTILREDKGVSRSYFPSKGKVPKNETGF-----------PDLLSGMPSP 162
AV PS N+ T E GV R+YF S + E P +P
Sbjct: 113 AVQPSDNISRKHTFKAEHAGV-RTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQA 171
Query: 163 GRYGHSRPDPIPVPPFSSTHLPLPWFALHQPAKDCQ 198
R+ H +PD VPP S H P +L +P + +
Sbjct: 172 VRHSHEKPDSENVPP-SKHHQQPPHNSLPKPEPEAK 206
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 31.6 bits (70), Expect = 0.57
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 145 VPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPP 177
VP + P LLSG+PSP S P +P PP
Sbjct: 170 VPSPPSDVPSLLSGVPSPPSDVPSPPSDVPSPP 202
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 145 VPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPP 177
VP + P LLSG+PSP S P +P PP
Sbjct: 142 VPSLLSDVPSLLSGVPSPPSDVPSPPSDVPSPP 174
>gi|21265080 mitochondrial ribosomal protein L18 [Homo sapiens]
Length = 180
Score = 31.6 bits (70), Expect = 0.57
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 65 GCQVATLSAPLSPPERSR--PPEPDAVWGYPQTRCIEN-QSECVARGEEAWRAVDPSQNL 121
GC+ A LS P + P E +AV R N + VAR E WR V PS+
Sbjct: 18 GCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREF 77
Query: 122 GLALTILREDKGVSRSYFPSKGKV 145
L ++R V GKV
Sbjct: 78 WHRLRVIRTQHHVEALVEHQNGKV 101
>gi|83776598 virus-induced signaling adapter [Homo sapiens]
Length = 540
Score = 30.8 bits (68), Expect = 0.98
Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 71 LSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQNLGLALTILRE 130
L P P ER PP P A P C E + +E P +N AL L
Sbjct: 107 LEPPSLPAERPGPPTPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTL-- 164
Query: 131 DKGVSRSYFPSKGKVPKNETGFP 153
S +P+N G P
Sbjct: 165 ----------SPRAIPRNPDGGP 177
>gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 248
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKAG 65
VLKQ H +S + + +M+ + DI + I T+AG
Sbjct: 161 VLKQVHXGLSLSQEAVSVMDSMIHDILDRIATEAG 195
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 155 LLSGMPSPGRYGHSRPDPIPVPPFSSTHLP 184
LLS + P + PDP+P PP +S +P
Sbjct: 1301 LLSPLEGPNLTPEASPDPLPEPPLASVEVP 1330
>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 257
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKAG 65
VLKQ H +S + + +M+ + DI + I T+AG
Sbjct: 170 VLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAG 204
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,098,674
Number of Sequences: 37866
Number of extensions: 610137
Number of successful extensions: 2395
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2334
Number of HSP's gapped (non-prelim): 92
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.