BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene family [Homo sapiens] (224 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene f... 472 e-133 gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene f... 472 e-133 gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene f... 472 e-133 gi|28173554 histone cluster 3, H2bb [Homo sapiens] 40 0.002 gi|4504259 histone cluster 1, H2bl [Homo sapiens] 40 0.002 gi|4504277 histone cluster 2, H2be [Homo sapiens] 39 0.005 gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens] 39 0.005 gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens] 39 0.005 gi|20336754 histone cluster 1, H2bj [Homo sapiens] 39 0.005 gi|10800138 histone cluster 1, H2bd [Homo sapiens] 39 0.005 gi|18105048 histone cluster 1, H2bk [Homo sapiens] 39 0.005 gi|16306566 histone cluster 1, H2bo [Homo sapiens] 39 0.005 gi|4504269 histone cluster 1, H2bh [Homo sapiens] 39 0.005 gi|4504263 histone cluster 1, H2bm [Homo sapiens] 39 0.005 gi|20336752 histone cluster 1, H2bd [Homo sapiens] 39 0.005 gi|4504261 histone cluster 1, H2bn [Homo sapiens] 39 0.005 gi|10800140 histone cluster 1, H2bb [Homo sapiens] 39 0.005 gi|21396484 histone cluster 1, H2be [Homo sapiens] 39 0.005 gi|4504265 histone cluster 1, H2bf [Homo sapiens] 39 0.005 gi|4504257 histone cluster 1, H2bg [Homo sapiens] 39 0.005 gi|21166389 histone cluster 1, H2bc [Homo sapiens] 39 0.005 gi|4504271 histone cluster 1, H2bi [Homo sapiens] 39 0.005 gi|24586679 histone cluster 1, H2ba [Homo sapiens] 38 0.006 gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ... 33 0.20 gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.57 gi|21265080 mitochondrial ribosomal protein L18 [Homo sapiens] 32 0.57 gi|83776598 virus-induced signaling adapter [Homo sapiens] 31 0.98 gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens] 30 1.7 gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 30 1.7 gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens] 30 1.7 >gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene family [Homo sapiens] Length = 224 Score = 472 bits (1214), Expect = e-133 Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI Sbjct: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60 Query: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN Sbjct: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120 Query: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS Sbjct: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180 Query: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV Sbjct: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224 >gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene family [Homo sapiens] Length = 224 Score = 472 bits (1214), Expect = e-133 Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI Sbjct: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60 Query: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN Sbjct: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120 Query: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS Sbjct: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180 Query: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV Sbjct: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224 >gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene family [Homo sapiens] Length = 224 Score = 472 bits (1214), Expect = e-133 Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI Sbjct: 1 MSDRADAGVKFKRSSWVLVSDLTQNLPGHGVLKQFHPDISTTLNFLGIMNDFLIDIFEHI 60 Query: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN Sbjct: 61 TTKAGCQVATLSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQN 120 Query: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS Sbjct: 121 LGLALTILREDKGVSRSYFPSKGKVPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPPFSS 180 Query: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV Sbjct: 181 THLPLPWFALHQPAKDCQGSLLRFDYEGTLVPPRDRSLNCSFYV 224 >gi|28173554 histone cluster 3, H2bb [Homo sapiens] Length = 126 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I ++A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIASEA 78 >gi|4504259 histone cluster 1, H2bl [Homo sapiens] Length = 126 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I ++A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIASEA 78 >gi|4504277 histone cluster 2, H2be [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens] Length = 134 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|20336754 histone cluster 1, H2bj [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|10800138 histone cluster 1, H2bd [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|18105048 histone cluster 1, H2bk [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|16306566 histone cluster 1, H2bo [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|4504269 histone cluster 1, H2bh [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|4504263 histone cluster 1, H2bm [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|20336752 histone cluster 1, H2bd [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|4504261 histone cluster 1, H2bn [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|10800140 histone cluster 1, H2bb [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|21396484 histone cluster 1, H2be [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|4504265 histone cluster 1, H2bf [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|4504257 histone cluster 1, H2bg [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|21166389 histone cluster 1, H2bc [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|4504271 histone cluster 1, H2bi [Homo sapiens] Length = 126 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/34 (52%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + +GIMN F+ DIFE I +A Sbjct: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEA 78 >gi|24586679 histone cluster 1, H2ba [Homo sapiens] Length = 127 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64 VLKQ HPD + + IMN F+ DIFE I ++A Sbjct: 46 VLKQVHPDTGISSKAMSIMNSFVTDIFERIASEA 79 >gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo sapiens] Length = 1048 Score = 33.1 bits (74), Expect = 0.20 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 13/96 (13%) Query: 114 AVDPSQNLGLALTILREDKGVSRSYFPSKGKVPKNETGF-----------PDLLSGMPSP 162 AV PS N+ T E GV R+YF S + E P +P Sbjct: 113 AVQPSDNISRKHTFKAEHAGV-RTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQA 171 Query: 163 GRYGHSRPDPIPVPPFSSTHLPLPWFALHQPAKDCQ 198 R+ H +PD VPP S H P +L +P + + Sbjct: 172 VRHSHEKPDSENVPP-SKHHQQPPHNSLPKPEPEAK 206 >gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapiens] Length = 490 Score = 31.6 bits (70), Expect = 0.57 Identities = 15/33 (45%), Positives = 18/33 (54%) Query: 145 VPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPP 177 VP + P LLSG+PSP S P +P PP Sbjct: 170 VPSPPSDVPSLLSGVPSPPSDVPSPPSDVPSPP 202 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/33 (45%), Positives = 18/33 (54%) Query: 145 VPKNETGFPDLLSGMPSPGRYGHSRPDPIPVPP 177 VP + P LLSG+PSP S P +P PP Sbjct: 142 VPSLLSDVPSLLSGVPSPPSDVPSPPSDVPSPP 174 >gi|21265080 mitochondrial ribosomal protein L18 [Homo sapiens] Length = 180 Score = 31.6 bits (70), Expect = 0.57 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Query: 65 GCQVATLSAPLSPPERSR--PPEPDAVWGYPQTRCIEN-QSECVARGEEAWRAVDPSQNL 121 GC+ A LS P + P E +AV R N + VAR E WR V PS+ Sbjct: 18 GCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLSVARKERGWRTVFPSREF 77 Query: 122 GLALTILREDKGVSRSYFPSKGKV 145 L ++R V GKV Sbjct: 78 WHRLRVIRTQHHVEALVEHQNGKV 101 >gi|83776598 virus-induced signaling adapter [Homo sapiens] Length = 540 Score = 30.8 bits (68), Expect = 0.98 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 12/83 (14%) Query: 71 LSAPLSPPERSRPPEPDAVWGYPQTRCIENQSECVARGEEAWRAVDPSQNLGLALTILRE 130 L P P ER PP P A P C E + +E P +N AL L Sbjct: 107 LEPPSLPAERPGPPTPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTL-- 164 Query: 131 DKGVSRSYFPSKGKVPKNETGFP 153 S +P+N G P Sbjct: 165 ----------SPRAIPRNPDGGP 177 >gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens] Length = 248 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKAG 65 VLKQ H +S + + +M+ + DI + I T+AG Sbjct: 161 VLKQVHXGLSLSQEAVSVMDSMIHDILDRIATEAG 195 >gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] Length = 2790 Score = 30.0 bits (66), Expect = 1.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 155 LLSGMPSPGRYGHSRPDPIPVPPFSSTHLP 184 LLS + P + PDP+P PP +S +P Sbjct: 1301 LLSPLEGPNLTPEASPDPLPEPPLASVEVP 1330 >gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens] Length = 257 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Query: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKAG 65 VLKQ H +S + + +M+ + DI + I T+AG Sbjct: 170 VLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAG 204 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.137 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,098,674 Number of Sequences: 37866 Number of extensions: 610137 Number of successful extensions: 2395 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 34 Number of HSP's that attempted gapping in prelim test: 2334 Number of HSP's gapped (non-prelim): 92 length of query: 224 length of database: 18,247,518 effective HSP length: 98 effective length of query: 126 effective length of database: 14,536,650 effective search space: 1831617900 effective search space used: 1831617900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.