Guide to the Human Genome
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Name: LOC100131801 Sequence: fasta or formatted (73aa) NCBI GI: 169214175
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {73aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          3           1
 C cysteine            0.0          0           0
 D aspartate           4.1          3           2
 E glutamate          15.1         11           2
 F phenylalanine       6.8          5           1
 G glycine             1.4          1           1
 H histidine           0.0          0           0
 I isoleucine          6.8          5           2
 K lysine              8.2          6           1
 L leucine             9.6          7           2
 M methionine          4.1          3           1
 N asparagine          2.7          2           1
 P proline             4.1          3           2
 Q glutamine           6.8          5           2
 R arginine           11.0          8           2
 S serine              2.7          2           1
 T threonine           1.4          1           1
 V valine              5.5          4           1
 W tryptophan          4.1          3           1
 Y tyrosine            1.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131801          1.000   PREDICTED: hypothetical protein 
LOC100292359          0.952   PREDICTED: hypothetical protein 
LOC100291478          0.952   PREDICTED: hypothetical protein XP_002346583 
LOC100287402          0.952   PREDICTED: hypothetical protein XP_002342425 
LOC283685             0.063   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.063   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TCHH                  0.056   trichohyalin 
BAZ1A                 0.040   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.040   bromodomain adjacent to zinc finger domain, 1A isofo...
CROP                  0.024   cisplatin resistance-associated overexpressed protei...
CROP                  0.024   cisplatin resistance-associated overexpressed protei...
LOC727832             0.024   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.024   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.024   PREDICTED: Putative golgin subfamily A member 6-lik...
BAT2L                 0.024   HLA-B associated transcript 2-like 
TRABD                 0.024   TraB domain containing 
IMMP2L                0.016   IMP2 inner mitochondrial membrane protease-like [Hom...
CDC25B                0.016   cell division cycle 25B isoform 1 
CDC25B                0.016   cell division cycle 25B isoform 3 
CDC25B                0.016   cell division cycle 25B isoform 2 
EIF2B4                0.016   eukaryotic translation initiation factor 2B, subunit...
EIF2B4                0.016   eukaryotic translation initiation factor 2B, subunit...
EIF2B4                0.016   eukaryotic translation initiation factor 2B, subuni...
PAK6                  0.016   p21-activated kinase 6 
PAK6                  0.016   p21-activated kinase 6 
PAK6                  0.016   p21-activated kinase 6 
LOC284422             0.016   hypothetical protein LOC284422 
LRRIQ1                0.016   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.016   leucine-rich repeats and IQ motif containing 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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