Guide to the Human Genome
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Name: LOC100134235 Sequence: fasta or formatted (87aa) NCBI GI: 169213766
Description:

PREDICTED: similar to hCG1642820

Referenced in:

Glycolysis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          6           1
 C cysteine            3.4          3           1
 D aspartate           3.4          3           1
 E glutamate           2.3          2           1
 F phenylalanine       1.1          1           1
 G glycine            11.5         10           2
 H histidine           8.0          7           2
 I isoleucine          2.3          2           1
 K lysine              8.0          7           2
 L leucine            10.3          9           1
 M methionine          2.3          2           1
 N asparagine          3.4          3           1
 P proline            10.3          9           2
 Q glutamine           4.6          4           1
 R arginine            3.4          3           1
 S serine              0.0          0           0
 T threonine           6.9          6           2
 V valine              6.9          6           2
 W tryptophan          2.3          2           1
 Y tyrosine            2.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1642820 
GAPDH                 0.306   glyceraldehyde-3-phosphate dehydrogenase 
GAPDHS                0.188   glyceraldehyde-3-phosphate dehydrogenase, spermatogen...
SLC5A9                0.029   solute carrier family 5 (sodium/glucose cotransport...
SLC5A9                0.029   solute carrier family 5 (sodium/glucose cotransport...
TTLL5                 0.018   tubulin tyrosine ligase-like family, member 5 
ULK2                  0.006   unc-51-like kinase 2 
ULK2                  0.006   unc-51-like kinase 2 
MITF                  0.006   microphthalmia-associated transcription factor isofo...
MITF                  0.006   microphthalmia-associated transcription factor isofo...
MITF                  0.006   microphthalmia-associated transcription factor isofo...
MITF                  0.006   microphthalmia-associated transcription factor isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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