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Search of human proteins with 169206521
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206521 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
(80 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206214 PREDICTED: hypothetical protein isoform 2 [Homo sap... 174 1e-44
gi|169206521 PREDICTED: hypothetical protein isoform 1 [Homo sap... 174 1e-44
gi|169205880 PREDICTED: hypothetical protein isoform 1 [Homo sap... 174 1e-44
gi|169206212 PREDICTED: hypothetical protein isoform 1 [Homo sap... 135 9e-33
gi|89037123 PREDICTED: hypothetical protein isoform 2 [Homo sapi... 135 9e-33
gi|89036792 PREDICTED: hypothetical protein isoform 2 [Homo sapi... 135 9e-33
gi|157738694 G protein-coupled receptor 109B [Homo sapiens] 27 2.7
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 27 2.7
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 27 2.7
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 27 4.6
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 27 4.6
gi|169208604 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|113425231 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|57528105 hypothetical protein LOC400831 [Homo sapiens] 26 6.0
gi|140561070 RIM-binding protein 2 [Homo sapiens] 26 7.8
gi|48255962 hypothetical protein LOC146723 [Homo sapiens] 26 7.8
>gi|169206214 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 80
Score = 174 bits (442), Expect = 1e-44
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
Query: 61 MQHELPGFPVLKYPTYSPGL 80
MQHELPGFPVLKYPTYSPGL
Sbjct: 61 MQHELPGFPVLKYPTYSPGL 80
>gi|169206521 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 80
Score = 174 bits (442), Expect = 1e-44
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
Query: 61 MQHELPGFPVLKYPTYSPGL 80
MQHELPGFPVLKYPTYSPGL
Sbjct: 61 MQHELPGFPVLKYPTYSPGL 80
>gi|169205880 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 80
Score = 174 bits (442), Expect = 1e-44
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
Query: 61 MQHELPGFPVLKYPTYSPGL 80
MQHELPGFPVLKYPTYSPGL
Sbjct: 61 MQHELPGFPVLKYPTYSPGL 80
>gi|169206212 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 72
Score = 135 bits (339), Expect = 9e-33
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
Query: 61 MQ 62
MQ
Sbjct: 61 MQ 62
>gi|89037123 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 72
Score = 135 bits (339), Expect = 9e-33
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
Query: 61 MQ 62
MQ
Sbjct: 61 MQ 62
>gi|89036792 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 72
Score = 135 bits (339), Expect = 9e-33
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1 MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
Query: 61 MQ 62
MQ
Sbjct: 61 MQ 62
>gi|157738694 G protein-coupled receptor 109B [Homo sapiens]
Length = 387
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 20 DNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDREMQHELPG 67
DNN + +E G P + R +P + E W G H G
Sbjct: 322 DNNRSTSVELTGDPNKTRGAPEALIANSGEPWSPSYLGPTSNNHSKKG 369
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 18 WGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDREMQHELPGFPV 70
W +N G L +P PQ++R R G H R R LP PV
Sbjct: 505 WEHSNKLGYLVSP--PQQIRRGERSCYRSINRGRHHSERSQRTQGPSLPATPV 555
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 18 WGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDREMQHELPGFPV 70
W +N G L +P PQ++R R G H R R LP PV
Sbjct: 505 WEHSNKLGYLVSP--PQQIRRGERSCYRSINRGRHHSERSQRTQGPSLPATPV 555
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 19 GDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDREMQHELPGFPVLKYPTYSP 78
G GD PG LR P D G L+GD +PG P +K P+ SP
Sbjct: 1127 GPPGCPGDHGMPG----LRGQPGEMGDPGPRG----LQGDPG----IPGPPGIKGPSGSP 1174
Query: 79 GL 80
GL
Sbjct: 1175 GL 1176
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 27 LEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDREMQHELPGFPVLK 72
L P G + P R D+ + G QH LPGFP LK
Sbjct: 498 LPGPKGFAGINGEPGRKGDRGDPG-----------QHGLPGFPGLK 532
>gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 10 SHSQSQDCWGDNNAAGDLEAPGGP---QRLRSSPRRAADQAEEGW 51
S +S W + A +L+ PG P RL S R AA W
Sbjct: 49 SEMESDGVWHEPRACSELKVPGTPPLLSRLGHSARGAAGGGGRDW 93
>gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 10 SHSQSQDCWGDNNAAGDLEAPGGP---QRLRSSPRRAADQAEEGW 51
S +S W + A +L+ PG P RL S R AA W
Sbjct: 49 SEMESDGVWHEPRACSELKVPGTPPLLSRLGHSARGAAGGGGRDW 93
>gi|57528105 hypothetical protein LOC400831 [Homo sapiens]
Length = 122
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 4 LLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLR----SSPRRAADQAEEGWIHMLRGDR 59
LL +H HS ++ D+ D + GG +R S R G +LRG+
Sbjct: 56 LLTLRHLHSVLEELRADSAHWEDARSSGGTSPIRARAGSEGRGCQPVCSRGLAQLLRGED 115
Query: 60 EMQHELP 66
+ LP
Sbjct: 116 SRRSSLP 122
>gi|140561070 RIM-binding protein 2 [Homo sapiens]
Length = 1052
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 11 HSQSQDCWGDNNAAGD-----LEAPGGPQRLRSSPRRAADQAE 48
H++ + W + A G LE P GP R SP R Q +
Sbjct: 618 HARMDEAWEQSRAPGPVHGHMLEPPVGPGRRSPSPSRILPQPQ 660
>gi|48255962 hypothetical protein LOC146723 [Homo sapiens]
Length = 243
Score = 25.8 bits (55), Expect = 7.8
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 21/95 (22%)
Query: 7 KKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRS---------SPRRAADQAEE-------- 49
K++ Q C G + A + E PGG Q LRS + + + ++ E
Sbjct: 134 KENVSGTGQVCTGVHVGAKEQEEPGGTQALRSCGIYCLEERTDKASHEECRERSTLGRPQ 193
Query: 50 --GWIHMLRGDREMQHELPGFPVLKYPTYS--PGL 80
G L G+ LPG P +++ S PGL
Sbjct: 194 CTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGL 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,970,958
Number of Sequences: 37866
Number of extensions: 178129
Number of successful extensions: 510
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 16
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.