Guide to the Human Genome
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Name: LOC647281 Sequence: fasta or formatted (80aa) NCBI GI: 169206521
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {80aa} PREDICTED: hypothetical protein isoform 1
alt prot {72aa} PREDICTED: hypothetical protein isoform 1
alt mRNA {80aa} PREDICTED: hypothetical protein isoform 2
alt prot {72aa} PREDICTED: hypothetical protein isoform 2
alt prot {72aa} PREDICTED: hypothetical protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5          6           2
 C cysteine            1.2          1           1
 D aspartate           6.2          5           1
 E glutamate           6.2          5           2
 F phenylalanine       2.5          2           1
 G glycine            10.0          8           2
 H histidine           5.0          4           1
 I isoleucine          1.2          1           1
 K lysine              3.8          3           2
 L leucine            11.2          9           3
 M methionine          3.8          3           1
 N asparagine          2.5          2           2
 P proline            10.0          8           1
 Q glutamine           6.2          5           1
 R arginine            7.5          6           2
 S serine              7.5          6           2
 T threonine           1.2          1           1
 V valine              1.2          1           1
 W tryptophan          2.5          2           1
 Y tyrosine            2.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC647281             1.000   PREDICTED: hypothetical protein isoform 2 
LOC647281             1.000   PREDICTED: hypothetical protein isoform 1 
LOC647281             0.738   PREDICTED: hypothetical protein isoform 1 
LOC647281             0.738   PREDICTED: hypothetical protein isoform 2 
LOC647281             0.738   PREDICTED: hypothetical protein isoform 2 
NIACR2                0.013   G protein-coupled receptor 109B 
RBBP6                 0.013   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.013   retinoblastoma-binding protein 6 isoform 1 
COL4A4                0.013   alpha 4 type IV collagen precursor 
COL4A2                0.013   alpha 2 type IV collagen preproprotein 
LOC729154             0.007   PREDICTED: hypothetical protein 
LOC729154             0.007   PREDICTED: hypothetical protein 
LOC400831             0.007   hypothetical protein LOC400831 
RIMBP2                0.007   RIM-binding protein 2 
C17orf77              0.007   hypothetical protein LOC146723 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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