Guide to the Human Genome
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Search of human proteins with 169205186

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169205186 PREDICTED: similar to mCG115122 [Homo sapiens]
         (68 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169204585 PREDICTED: similar to mCG115122 [Homo sapiens]           137   2e-33
gi|169205186 PREDICTED: similar to mCG115122 [Homo sapiens]           137   2e-33
gi|169204245 PREDICTED: similar to mCG115122 [Homo sapiens]           137   2e-33
gi|169217249 PREDICTED: hypothetical protein [Homo sapiens]            87   4e-18
gi|113430608 PREDICTED: hypothetical protein [Homo sapiens]            87   4e-18
gi|113430126 PREDICTED: hypothetical protein [Homo sapiens]            87   4e-18
gi|33186895 selenoprotein V [Homo sapiens]                             28   1.6  
gi|5031955 solute carrier family 17 (sodium phosphate), member 2...    27   3.5  
gi|116805334 Ras-induced senescence 1 [Homo sapiens]                   26   5.9  
gi|61743933 AKT interacting protein [Homo sapiens]                     26   7.7  
gi|11968027 AKT interacting protein [Homo sapiens]                     26   7.7  
gi|23238226 CDC42 effector protein 1 [Homo sapiens]                    26   7.7  
gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein ...    26   7.7  

>gi|169204585 PREDICTED: similar to mCG115122 [Homo sapiens]
          Length = 68

 Score =  137 bits (345), Expect = 2e-33
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
          MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL
Sbjct: 1  MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60

Query: 61 NIRLQVHI 68
          NIRLQVHI
Sbjct: 61 NIRLQVHI 68


>gi|169205186 PREDICTED: similar to mCG115122 [Homo sapiens]
          Length = 68

 Score =  137 bits (345), Expect = 2e-33
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
          MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL
Sbjct: 1  MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60

Query: 61 NIRLQVHI 68
          NIRLQVHI
Sbjct: 61 NIRLQVHI 68


>gi|169204245 PREDICTED: similar to mCG115122 [Homo sapiens]
          Length = 68

 Score =  137 bits (345), Expect = 2e-33
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
          MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL
Sbjct: 1  MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60

Query: 61 NIRLQVHI 68
          NIRLQVHI
Sbjct: 61 NIRLQVHI 68


>gi|169217249 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/65 (66%), Positives = 49/65 (75%)

Query: 4   AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVILNIR 63
           AAA S LAVR S P  T  SYG FCK L+RTLL FF+LAW+LR NF YFY+  SVILN+ 
Sbjct: 138 AAALSGLAVRLSRPQGTRGSYGAFCKTLTRTLLTFFDLAWRLRKNFFYFYILASVILNVH 197

Query: 64  LQVHI 68
           LQV+I
Sbjct: 198 LQVYI 202


>gi|113430608 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 161

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/65 (66%), Positives = 49/65 (75%)

Query: 4   AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVILNIR 63
           AAA S LAVR S P  T  SYG FCK L+RTLL FF+LAW+LR NF YFY+  SVILN+ 
Sbjct: 97  AAALSGLAVRLSRPQGTRGSYGAFCKTLTRTLLTFFDLAWRLRKNFFYFYILASVILNVH 156

Query: 64  LQVHI 68
           LQV+I
Sbjct: 157 LQVYI 161


>gi|113430126 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 161

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/65 (66%), Positives = 49/65 (75%)

Query: 4   AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVILNIR 63
           AAA S LAVR S P  T  SYG FCK L+RTLL FF+LAW+LR NF YFY+  SVILN+ 
Sbjct: 97  AAALSGLAVRLSRPQGTRGSYGAFCKTLTRTLLTFFDLAWRLRKNFFYFYILASVILNVH 156

Query: 64  LQVHI 68
           LQV+I
Sbjct: 157 LQVYI 161


>gi|33186895 selenoprotein V [Homo sapiens]
          Length = 346

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query: 2  APAAAPSSLAVRASSPAATPT 22
          AP++A +S +VRAS+P  TPT
Sbjct: 9  APSSARTSTSVRASTPTRTPT 29


>gi|5031955 solute carrier family 17 (sodium phosphate), member 2
           [Homo sapiens]
          Length = 436

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 8   SSLAVRASSPA-ATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYF--YVAGSVILNIR 63
           SSLA + SSP  A P    V C  L    L FF   W   +   Y   Y++  + +NIR
Sbjct: 251 SSLAQQPSSPGRAVPIKAMVTCLPLWAIFLGFFSHFWLCTIILTYLPTYISTLLHVNIR 309


>gi|116805334 Ras-induced senescence 1 [Homo sapiens]
          Length = 300

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 1   MAPAAAPSSLAVRASSPAATP 21
           + PAAAPS+ A  A +P A P
Sbjct: 157 LRPAAAPSAAAATAGAPTALP 177


>gi|61743933 AKT interacting protein [Homo sapiens]
          Length = 292

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3  PAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGS 57
          P   P+S A  A S   T  SYG F   L  +LLA F L   ++   P  YV  S
Sbjct: 49 PITKPTSPAPAAQSTNGTHASYGPFY--LEYSLLAEFTLV--VKQKLPGVYVQPS 99


>gi|11968027 AKT interacting protein [Homo sapiens]
          Length = 292

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3  PAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGS 57
          P   P+S A  A S   T  SYG F   L  +LLA F L   ++   P  YV  S
Sbjct: 49 PITKPTSPAPAAQSTNGTHASYGPFY--LEYSLLAEFTLV--VKQKLPGVYVQPS 99


>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
          Length = 391

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 2   APAAAPSSLAVRASSPAATPTSYGVFCKGLSRTL 35
           APAA P+  A    +PAA+ T +G    G++  L
Sbjct: 261 APAATPTGPAANPPAPAASSTPHGHCPNGVTAGL 294


>gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein
           retention receptor 1 [Homo sapiens]
          Length = 212

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 4   AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFY 53
           A  P    V  +  A T TS+ +F  G+ RTL  F    W  R +F  F+
Sbjct: 130 AILPQLFMVSKTGEAETITSHYLFALGVYRTLYLF---NWIWRYHFEGFF 176


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,550,681
Number of Sequences: 37866
Number of extensions: 83265
Number of successful extensions: 527
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 18
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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