Guide to the Human Genome
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Search of human proteins with 169205160

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169205160 PREDICTED: similar to hCG2040283 [Homo sapiens]
         (126 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169204514 PREDICTED: similar to hCG2040283 [Homo sapiens]          245   7e-66
gi|169205160 PREDICTED: similar to hCG2040283 [Homo sapiens]          245   7e-66
gi|169204408 PREDICTED: hypothetical protein LOC390282 [Homo sap...   245   7e-66
gi|4503519 eukaryotic translation initiation factor 3, subunit 5...   216   4e-57
gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]         35   0.015
gi|88853867 hypothetical protein LOC388135 [Homo sapiens]              31   0.22 
gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]                  30   0.37 
gi|187829052 tumor protein p73 isoform d [Homo sapiens]                27   5.4  
gi|187829017 tumor protein p73 isoform c [Homo sapiens]                27   5.4  
gi|187828902 tumor protein p73 isoform b [Homo sapiens]                27   5.4  
gi|4885645 tumor protein p73 isoform a [Homo sapiens]                  27   5.4  
gi|19913410 major vault protein [Homo sapiens]                         26   7.0  
gi|19913412 major vault protein [Homo sapiens]                         26   7.0  
gi|223029410 talin 1 [Homo sapiens]                                    26   9.2  
gi|28466983 leprecan-like 2 [Homo sapiens]                             26   9.2  
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]                  26   9.2  

>gi|169204514 PREDICTED: similar to hCG2040283 [Homo sapiens]
          Length = 126

 Score =  245 bits (625), Expect = 7e-66
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
           MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL
Sbjct: 1   MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60

Query: 61  QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
           QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS
Sbjct: 61  QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120

Query: 121 EKLVNL 126
           EKLVNL
Sbjct: 121 EKLVNL 126


>gi|169205160 PREDICTED: similar to hCG2040283 [Homo sapiens]
          Length = 126

 Score =  245 bits (625), Expect = 7e-66
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
           MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL
Sbjct: 1   MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60

Query: 61  QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
           QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS
Sbjct: 61  QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120

Query: 121 EKLVNL 126
           EKLVNL
Sbjct: 121 EKLVNL 126


>gi|169204408 PREDICTED: hypothetical protein LOC390282 [Homo
           sapiens]
          Length = 126

 Score =  245 bits (625), Expect = 7e-66
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
           MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL
Sbjct: 1   MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60

Query: 61  QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
           QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS
Sbjct: 61  QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120

Query: 121 EKLVNL 126
           EKLVNL
Sbjct: 121 EKLVNL 126


>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
           epsilon, 47kDa [Homo sapiens]
          Length = 357

 Score =  216 bits (550), Expect = 4e-57
 Identities = 114/130 (87%), Positives = 119/130 (91%), Gaps = 4/130 (3%)

Query: 1   MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
           M VMFTPLTVKY Y DTERIGVDLI+KTCFSPNRVIGLS DLQQVGGASARI+DALS VL
Sbjct: 228 MGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVL 287

Query: 61  QYAEDVLSGKVS----VGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQ 116
           QYAEDVLSGKVS    VGRFL++LVNQVPKIVPDDFE MLN NINDLLMVTYLANLTQSQ
Sbjct: 288 QYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQ 347

Query: 117 IALSEKLVNL 126
           IAL+EKLVNL
Sbjct: 348 IALNEKLVNL 357


>gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]
          Length = 324

 Score = 35.0 bits (79), Expect = 0.015
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 33  NRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSVGRFLVNLVNQVPKIVPD-- 90
           N+V GL G           +   L  +  Y E V +GK+ +   ++  +  V  ++PD  
Sbjct: 193 NQVHGLKG-----------LNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVS 241

Query: 91  --DFEIMLNGNINDLLMVTYLANLTQSQIALSEKLVN 125
             +F        ND ++V YLA+L +S +AL   + N
Sbjct: 242 LQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINN 278


>gi|88853867 hypothetical protein LOC388135 [Homo sapiens]
          Length = 293

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 36 IGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSVGRFLVNLVNQVPKIVPD-DFEI 94
          +G   D    GG   RIR  +  V+   E +L     V + L  +V+Q+ K+  D DFE+
Sbjct: 9  LGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFEL 68


>gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]
          Length = 327

 Score = 30.4 bits (67), Expect = 0.37
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 3   VMFTPLTVKYVYCDTERIGVDLIVK-TCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQ 61
           ++F  LT      + ERIGVD + + T         ++  L     A   +   +  +L+
Sbjct: 181 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE 240

Query: 62  YAEDVLSGKVSVGRFLVN----LVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQS 115
           Y +   +G+V     ++     L + +P +  D F+       ND+ ++ YL  +T++
Sbjct: 241 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKT 298


>gi|187829052 tumor protein p73 isoform d [Homo sapiens]
          Length = 426

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 25  IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
           +VK C  PN  +G   +  Q   AS  IR   + + QY +D ++G+ SV
Sbjct: 141 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 187


>gi|187829017 tumor protein p73 isoform c [Homo sapiens]
          Length = 450

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 25  IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
           +VK C  PN  +G   +  Q   AS  IR   + + QY +D ++G+ SV
Sbjct: 141 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 187


>gi|187828902 tumor protein p73 isoform b [Homo sapiens]
          Length = 587

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 25  IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
           +VK C  PN  +G   +  Q   AS  IR   + + QY +D ++G+ SV
Sbjct: 141 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 187


>gi|4885645 tumor protein p73 isoform a [Homo sapiens]
          Length = 636

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 25  IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
           +VK C  PN  +G   +  Q   AS  IR   + + QY +D ++G+ SV
Sbjct: 190 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 236


>gi|19913410 major vault protein [Homo sapiens]
          Length = 893

 Score = 26.2 bits (56), Expect = 7.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 30  FSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDV 66
           F  N ++  S D+Q V     R RDAL R +Q A ++
Sbjct: 628 FPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEI 664


>gi|19913412 major vault protein [Homo sapiens]
          Length = 893

 Score = 26.2 bits (56), Expect = 7.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 30  FSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDV 66
           F  N ++  S D+Q V     R RDAL R +Q A ++
Sbjct: 628 FPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEI 664


>gi|223029410 talin 1 [Homo sapiens]
          Length = 2541

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 26  VKTCFSPNRVIGLSGDLQQ-VGGASARIRDALSRVLQYAEDVLSGKVSVGRF 76
           V+ C S ++     G L + VG A+  +  AL+ +LQ+ +   +G    GR+
Sbjct: 747 VEGCVSASQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRY 798


>gi|28466983 leprecan-like 2 [Homo sapiens]
          Length = 736

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 30  FSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSVGRFLVNLVNQVPKIVP 89
           F PN++  L     QVG  S  I + LS +L Y ED  + K ++ ++   L    P + P
Sbjct: 314 FLPNQLRRLHEAHAQVGNLSQAIENVLSVLLFYPEDE-AAKRALNQYQAQLGEPRPGLGP 372


>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
          Length = 689

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 15  CDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSG 69
           C+   + + +  K  + P+R++GL  D + +  A   IR  LS  L+     L G
Sbjct: 452 CNVGHLTLSIACK--WGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEG 504


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,622,201
Number of Sequences: 37866
Number of extensions: 123177
Number of successful extensions: 243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 16
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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