Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169204585
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204585 PREDICTED: similar to mCG115122 [Homo sapiens]
(68 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204585 PREDICTED: similar to mCG115122 [Homo sapiens] 137 2e-33
gi|169205186 PREDICTED: similar to mCG115122 [Homo sapiens] 137 2e-33
gi|169204245 PREDICTED: similar to mCG115122 [Homo sapiens] 137 2e-33
gi|169217249 PREDICTED: hypothetical protein [Homo sapiens] 87 4e-18
gi|113430608 PREDICTED: hypothetical protein [Homo sapiens] 87 4e-18
gi|113430126 PREDICTED: hypothetical protein [Homo sapiens] 87 4e-18
gi|33186895 selenoprotein V [Homo sapiens] 28 1.6
gi|5031955 solute carrier family 17 (sodium phosphate), member 2... 27 3.5
gi|116805334 Ras-induced senescence 1 [Homo sapiens] 26 5.9
gi|61743933 AKT interacting protein [Homo sapiens] 26 7.7
gi|11968027 AKT interacting protein [Homo sapiens] 26 7.7
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 26 7.7
gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein ... 26 7.7
>gi|169204585 PREDICTED: similar to mCG115122 [Homo sapiens]
Length = 68
Score = 137 bits (345), Expect = 2e-33
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL
Sbjct: 1 MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
Query: 61 NIRLQVHI 68
NIRLQVHI
Sbjct: 61 NIRLQVHI 68
>gi|169205186 PREDICTED: similar to mCG115122 [Homo sapiens]
Length = 68
Score = 137 bits (345), Expect = 2e-33
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL
Sbjct: 1 MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
Query: 61 NIRLQVHI 68
NIRLQVHI
Sbjct: 61 NIRLQVHI 68
>gi|169204245 PREDICTED: similar to mCG115122 [Homo sapiens]
Length = 68
Score = 137 bits (345), Expect = 2e-33
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL
Sbjct: 1 MAPAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVIL 60
Query: 61 NIRLQVHI 68
NIRLQVHI
Sbjct: 61 NIRLQVHI 68
>gi|169217249 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 86.7 bits (213), Expect = 4e-18
Identities = 43/65 (66%), Positives = 49/65 (75%)
Query: 4 AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVILNIR 63
AAA S LAVR S P T SYG FCK L+RTLL FF+LAW+LR NF YFY+ SVILN+
Sbjct: 138 AAALSGLAVRLSRPQGTRGSYGAFCKTLTRTLLTFFDLAWRLRKNFFYFYILASVILNVH 197
Query: 64 LQVHI 68
LQV+I
Sbjct: 198 LQVYI 202
>gi|113430608 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 86.7 bits (213), Expect = 4e-18
Identities = 43/65 (66%), Positives = 49/65 (75%)
Query: 4 AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVILNIR 63
AAA S LAVR S P T SYG FCK L+RTLL FF+LAW+LR NF YFY+ SVILN+
Sbjct: 97 AAALSGLAVRLSRPQGTRGSYGAFCKTLTRTLLTFFDLAWRLRKNFFYFYILASVILNVH 156
Query: 64 LQVHI 68
LQV+I
Sbjct: 157 LQVYI 161
>gi|113430126 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 86.7 bits (213), Expect = 4e-18
Identities = 43/65 (66%), Positives = 49/65 (75%)
Query: 4 AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGSVILNIR 63
AAA S LAVR S P T SYG FCK L+RTLL FF+LAW+LR NF YFY+ SVILN+
Sbjct: 97 AAALSGLAVRLSRPQGTRGSYGAFCKTLTRTLLTFFDLAWRLRKNFFYFYILASVILNVH 156
Query: 64 LQVHI 68
LQV+I
Sbjct: 157 LQVYI 161
>gi|33186895 selenoprotein V [Homo sapiens]
Length = 346
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 2 APAAAPSSLAVRASSPAATPT 22
AP++A +S +VRAS+P TPT
Sbjct: 9 APSSARTSTSVRASTPTRTPT 29
>gi|5031955 solute carrier family 17 (sodium phosphate), member 2
[Homo sapiens]
Length = 436
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 8 SSLAVRASSPA-ATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYF--YVAGSVILNIR 63
SSLA + SSP A P V C L L FF W + Y Y++ + +NIR
Sbjct: 251 SSLAQQPSSPGRAVPIKAMVTCLPLWAIFLGFFSHFWLCTIILTYLPTYISTLLHVNIR 309
>gi|116805334 Ras-induced senescence 1 [Homo sapiens]
Length = 300
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 1 MAPAAAPSSLAVRASSPAATP 21
+ PAAAPS+ A A +P A P
Sbjct: 157 LRPAAAPSAAAATAGAPTALP 177
>gi|61743933 AKT interacting protein [Homo sapiens]
Length = 292
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 3 PAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGS 57
P P+S A A S T SYG F L +LLA F L ++ P YV S
Sbjct: 49 PITKPTSPAPAAQSTNGTHASYGPFY--LEYSLLAEFTLV--VKQKLPGVYVQPS 99
>gi|11968027 AKT interacting protein [Homo sapiens]
Length = 292
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 3 PAAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFYVAGS 57
P P+S A A S T SYG F L +LLA F L ++ P YV S
Sbjct: 49 PITKPTSPAPAAQSTNGTHASYGPFY--LEYSLLAEFTLV--VKQKLPGVYVQPS 99
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 2 APAAAPSSLAVRASSPAATPTSYGVFCKGLSRTL 35
APAA P+ A +PAA+ T +G G++ L
Sbjct: 261 APAATPTGPAANPPAPAASSTPHGHCPNGVTAGL 294
>gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein
retention receptor 1 [Homo sapiens]
Length = 212
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 4 AAAPSSLAVRASSPAATPTSYGVFCKGLSRTLLAFFELAWQLRMNFPYFY 53
A P V + A T TS+ +F G+ RTL F W R +F F+
Sbjct: 130 AILPQLFMVSKTGEAETITSHYLFALGVYRTLYLF---NWIWRYHFEGFF 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,550,681
Number of Sequences: 37866
Number of extensions: 83265
Number of successful extensions: 527
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 18
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.