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Search of human proteins with 169204408
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204408 PREDICTED: hypothetical protein LOC390282 [Homo
sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204514 PREDICTED: similar to hCG2040283 [Homo sapiens] 245 7e-66
gi|169205160 PREDICTED: similar to hCG2040283 [Homo sapiens] 245 7e-66
gi|169204408 PREDICTED: hypothetical protein LOC390282 [Homo sap... 245 7e-66
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 216 4e-57
gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens] 35 0.015
gi|88853867 hypothetical protein LOC388135 [Homo sapiens] 31 0.22
gi|34147637 COP9 signalosome subunit 6 [Homo sapiens] 30 0.37
gi|187829052 tumor protein p73 isoform d [Homo sapiens] 27 5.4
gi|187829017 tumor protein p73 isoform c [Homo sapiens] 27 5.4
gi|187828902 tumor protein p73 isoform b [Homo sapiens] 27 5.4
gi|4885645 tumor protein p73 isoform a [Homo sapiens] 27 5.4
gi|19913410 major vault protein [Homo sapiens] 26 7.0
gi|19913412 major vault protein [Homo sapiens] 26 7.0
gi|223029410 talin 1 [Homo sapiens] 26 9.2
gi|28466983 leprecan-like 2 [Homo sapiens] 26 9.2
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 26 9.2
>gi|169204514 PREDICTED: similar to hCG2040283 [Homo sapiens]
Length = 126
Score = 245 bits (625), Expect = 7e-66
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL
Sbjct: 1 MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
Query: 61 QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS
Sbjct: 61 QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
Query: 121 EKLVNL 126
EKLVNL
Sbjct: 121 EKLVNL 126
>gi|169205160 PREDICTED: similar to hCG2040283 [Homo sapiens]
Length = 126
Score = 245 bits (625), Expect = 7e-66
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL
Sbjct: 1 MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
Query: 61 QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS
Sbjct: 61 QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
Query: 121 EKLVNL 126
EKLVNL
Sbjct: 121 EKLVNL 126
>gi|169204408 PREDICTED: hypothetical protein LOC390282 [Homo
sapiens]
Length = 126
Score = 245 bits (625), Expect = 7e-66
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL
Sbjct: 1 MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
Query: 61 QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS
Sbjct: 61 QYAEDVLSGKVSVGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQIALS 120
Query: 121 EKLVNL 126
EKLVNL
Sbjct: 121 EKLVNL 126
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 216 bits (550), Expect = 4e-57
Identities = 114/130 (87%), Positives = 119/130 (91%), Gaps = 4/130 (3%)
Query: 1 MAVMFTPLTVKYVYCDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVL 60
M VMFTPLTVKY Y DTERIGVDLI+KTCFSPNRVIGLS DLQQVGGASARI+DALS VL
Sbjct: 228 MGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVL 287
Query: 61 QYAEDVLSGKVS----VGRFLVNLVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQSQ 116
QYAEDVLSGKVS VGRFL++LVNQVPKIVPDDFE MLN NINDLLMVTYLANLTQSQ
Sbjct: 288 QYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQ 347
Query: 117 IALSEKLVNL 126
IAL+EKLVNL
Sbjct: 348 IALNEKLVNL 357
>gi|25777615 proteasome 26S non-ATPase subunit 7 [Homo sapiens]
Length = 324
Score = 35.0 bits (79), Expect = 0.015
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 33 NRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSVGRFLVNLVNQVPKIVPD-- 90
N+V GL G + L + Y E V +GK+ + ++ + V ++PD
Sbjct: 193 NQVHGLKG-----------LNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVS 241
Query: 91 --DFEIMLNGNINDLLMVTYLANLTQSQIALSEKLVN 125
+F ND ++V YLA+L +S +AL + N
Sbjct: 242 LQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINN 278
>gi|88853867 hypothetical protein LOC388135 [Homo sapiens]
Length = 293
Score = 31.2 bits (69), Expect = 0.22
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 36 IGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSVGRFLVNLVNQVPKIVPD-DFEI 94
+G D GG RIR + V+ E +L V + L +V+Q+ K+ D DFE+
Sbjct: 9 LGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFEL 68
>gi|34147637 COP9 signalosome subunit 6 [Homo sapiens]
Length = 327
Score = 30.4 bits (67), Expect = 0.37
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 3 VMFTPLTVKYVYCDTERIGVDLIVK-TCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQ 61
++F LT + ERIGVD + + T ++ L A + + +L+
Sbjct: 181 MLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILE 240
Query: 62 YAEDVLSGKVSVGRFLVN----LVNQVPKIVPDDFEIMLNGNINDLLMVTYLANLTQS 115
Y + +G+V ++ L + +P + D F+ ND+ ++ YL +T++
Sbjct: 241 YVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKT 298
>gi|187829052 tumor protein p73 isoform d [Homo sapiens]
Length = 426
Score = 26.6 bits (57), Expect = 5.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 25 IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
+VK C PN +G + Q AS IR + + QY +D ++G+ SV
Sbjct: 141 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 187
>gi|187829017 tumor protein p73 isoform c [Homo sapiens]
Length = 450
Score = 26.6 bits (57), Expect = 5.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 25 IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
+VK C PN +G + Q AS IR + + QY +D ++G+ SV
Sbjct: 141 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 187
>gi|187828902 tumor protein p73 isoform b [Homo sapiens]
Length = 587
Score = 26.6 bits (57), Expect = 5.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 25 IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
+VK C PN +G + Q AS IR + + QY +D ++G+ SV
Sbjct: 141 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 187
>gi|4885645 tumor protein p73 isoform a [Homo sapiens]
Length = 636
Score = 26.6 bits (57), Expect = 5.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 25 IVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSV 73
+VK C PN +G + Q AS IR + + QY +D ++G+ SV
Sbjct: 190 VVKRC--PNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSV 236
>gi|19913410 major vault protein [Homo sapiens]
Length = 893
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 30 FSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDV 66
F N ++ S D+Q V R RDAL R +Q A ++
Sbjct: 628 FPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEI 664
>gi|19913412 major vault protein [Homo sapiens]
Length = 893
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 30 FSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDV 66
F N ++ S D+Q V R RDAL R +Q A ++
Sbjct: 628 FPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEI 664
>gi|223029410 talin 1 [Homo sapiens]
Length = 2541
Score = 25.8 bits (55), Expect = 9.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 26 VKTCFSPNRVIGLSGDLQQ-VGGASARIRDALSRVLQYAEDVLSGKVSVGRF 76
V+ C S ++ G L + VG A+ + AL+ +LQ+ + +G GR+
Sbjct: 747 VEGCVSASQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRY 798
>gi|28466983 leprecan-like 2 [Homo sapiens]
Length = 736
Score = 25.8 bits (55), Expect = 9.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 30 FSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSGKVSVGRFLVNLVNQVPKIVP 89
F PN++ L QVG S I + LS +L Y ED + K ++ ++ L P + P
Sbjct: 314 FLPNQLRRLHEAHAQVGNLSQAIENVLSVLLFYPEDE-AAKRALNQYQAQLGEPRPGLGP 372
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 25.8 bits (55), Expect = 9.2
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 15 CDTERIGVDLIVKTCFSPNRVIGLSGDLQQVGGASARIRDALSRVLQYAEDVLSG 69
C+ + + + K + P+R++GL D + + A IR LS L+ L G
Sbjct: 452 CNVGHLTLSIACK--WGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEG 504
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,622,201
Number of Sequences: 37866
Number of extensions: 123177
Number of successful extensions: 243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 16
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.