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Search of human proteins with 169183848
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
(43 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 87 4e-18
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 87 4e-18
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 87 4e-18
gi|10863895 thymosin, beta 10 [Homo sapiens] 56 5e-09
gi|11056061 thymosin, beta 4 [Homo sapiens] 42 1e-04
gi|34013530 thymosin-like 3 [Homo sapiens] 41 2e-04
gi|167555119 thymosin beta15b [Homo sapiens] 39 7e-04
gi|11496273 thymosin-like 8 [Homo sapiens] 39 7e-04
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens] 38 0.002
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 36 0.006
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 36 0.006
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ... 35 0.013
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ... 35 0.013
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 34 0.022
>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 86.7 bits (213), Expect = 4e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 86.7 bits (213), Expect = 4e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 86.7 bits (213), Expect = 4e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQKNTLMTKETTEQEKWSEIS 43
>gi|10863895 thymosin, beta 10 [Homo sapiens]
Length = 44
Score = 56.2 bits (134), Expect = 5e-09
Identities = 33/44 (75%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEKWSEIS 43
MA K D+ EIAS DKAKLK TE Q KNTL TKET EQEK SEIS
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSEIS 44
>gi|11056061 thymosin, beta 4 [Homo sapiens]
Length = 44
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
M+ K D+ EI DK+KLK TE Q KN L +KET EQEK
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEK 39
>gi|34013530 thymosin-like 3 [Homo sapiens]
Length = 44
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
M+ K D+ EI DK KLK TE Q KN L +KET EQEK
Sbjct: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEK 39
>gi|167555119 thymosin beta15b [Homo sapiens]
Length = 45
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
M+ K DL E+ D++KLK T + KNTL +KET +QEK
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
>gi|11496273 thymosin-like 8 [Homo sapiens]
Length = 45
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
M+ K DL E+ D++KLK T + KNTL +KET +QEK
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
Length = 44
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
M+ K + EI DK+KLK TE Q KN L +KET EQE+
Sbjct: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQER 39
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
M+ K +++EI K+KLK TEMQ KN +KE EQEK
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEK 39
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
M+ K +++EI K+KLK TEMQ KN +KE EQEK
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEK 39
>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
M++K D+ ++ D+ KLK +KNTL+ +ET +QEK
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
Length = 45
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
M++K D+ ++ D+ KLK +KNTL+ +ET +QEK
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
sapiens]
Length = 45
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MAHKLDLEEIASLDKAKLKA-TEMQKNTLMTKETTEQEK 38
M++K D+ ++ D+ KLK +KNTL+ +ET +QEK
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEK 39
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 4 KLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
K +++EI K+KLK TEMQ KN +KE EQEK
Sbjct: 127 KSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEK 162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.301 0.114 0.289
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,278,885
Number of Sequences: 37866
Number of extensions: 27156
Number of successful extensions: 107
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 15
length of query: 43
length of database: 18,247,518
effective HSP length: 17
effective length of query: 26
effective length of database: 17,603,796
effective search space: 457698696
effective search space used: 457698696
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.