Search of human proteins with 169180189

Search of human proteins with 169180189

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169180189 PREDICTED: similar to hCG1993567 [Homo sapiens]
         (89 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169180189 PREDICTED: similar to hCG1993567 [Homo sapiens]          171   9e-44
gi|169174730 PREDICTED: similar to hCG1993567 [Homo sapiens]          171   9e-44
gi|169177162 PREDICTED: similar to hCG1993567 [Homo sapiens]          171   9e-44
gi|239758045 PREDICTED: similar to hCG1993567 [Homo sapiens]          150   2e-37
gi|4506661 ribosomal protein L7a [Homo sapiens]                        47   3e-06
gi|164698517 MAM domain containing 1 isoform 1 [Homo sapiens]          27   2.6  
gi|38158013 MAM domain containing 1 isoform 2 [Homo sapiens]           27   2.6  
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    27   3.4  
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]           26   5.9  
gi|123173772 tRNA(m1A58)-methyltransferase subunit TRM61 [Homo s...    26   7.7  

>gi|169180189 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 89

 Score =  171 bits (434), Expect = 9e-44
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT 60
          MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT
Sbjct: 1  MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT 60

Query: 61 SSPKGTSLALSNGPIILGCSSREPSSISS 89
          SSPKGTSLALSNGPIILGCSSREPSSISS
Sbjct: 61 SSPKGTSLALSNGPIILGCSSREPSSISS 89


>gi|169174730 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 89

 Score =  171 bits (434), Expect = 9e-44
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT 60
          MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT
Sbjct: 1  MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT 60

Query: 61 SSPKGTSLALSNGPIILGCSSREPSSISS 89
          SSPKGTSLALSNGPIILGCSSREPSSISS
Sbjct: 61 SSPKGTSLALSNGPIILGCSSREPSSISS 89


>gi|169177162 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 89

 Score =  171 bits (434), Expect = 9e-44
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT 60
          MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT
Sbjct: 1  MGVTMITILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRT 60

Query: 61 SSPKGTSLALSNGPIILGCSSREPSSISS 89
          SSPKGTSLALSNGPIILGCSSREPSSISS
Sbjct: 61 SSPKGTSLALSNGPIILGCSSREPSSISS 89


>gi|239758045 PREDICTED: similar to hCG1993567 [Homo sapiens]
          Length = 112

 Score =  150 bits (380), Expect = 2e-37
 Identities = 78/82 (95%), Positives = 80/82 (97%)

Query: 8   ILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 67
           +LQLPKV+K KKAKGKKVV TLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS
Sbjct: 31  LLQLPKVQKGKKAKGKKVVPTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 90

Query: 68  LALSNGPIILGCSSREPSSISS 89
           LALSNGPIILGCSSREPSSISS
Sbjct: 91  LALSNGPIILGCSSREPSSISS 112


>gi|4506661 ribosomal protein L7a [Homo sapiens]
          Length = 266

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 28/43 (65%), Positives = 29/43 (67%), Gaps = 4/43 (9%)

Query: 16 KRKKAKGKKVVLTLAVLKKQETMKVVNLPFEK----FGTGQDI 54
          K KKAKGKKV    AV+KKQE  KVVN  FEK    FG GQDI
Sbjct: 3  KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDI 45


>gi|164698517 MAM domain containing 1 isoform 1 [Homo sapiens]
          Length = 956

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 21  KGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSP 63
           KG+ +   L  L K E  +V   P  KFG G   + + + S+P
Sbjct: 696 KGELITYNLTELIKPEAYEVRLTPLTKFGEGDSTIRVIKYSAP 738


>gi|38158013 MAM domain containing 1 isoform 2 [Homo sapiens]
          Length = 727

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 21  KGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSP 63
           KG+ +   L  L K E  +V   P  KFG G   + + + S+P
Sbjct: 467 KGELITYNLTELIKPEAYEVRLTPLTKFGEGDSTIRVIKYSAP 509


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 10  QLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGT 50
           Q P++ ++KK+  KK + T+A   K+++ K      EKF +
Sbjct: 254 QEPQIDEKKKSNFKKKMRTVATKSKEKSKKFTPPKSEKFSS 294


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 19  KAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQDILALDRTSSPKGTS 67
           +++G+   L + +L KQ+T + V   FE FGT  +   L     P GTS
Sbjct: 89  ESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL---RGPDGTS 134


>gi|123173772 tRNA(m1A58)-methyltransferase subunit TRM61 [Homo
           sapiens]
          Length = 289

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 8   ILQLPKVRKRKKAKGKKVVLTLAVLKKQETMKVVNLPFEKFGTGQD 53
           I Q+ +  +   A+G   + TL VL +   ++ V+LP    GTG D
Sbjct: 210 IEQVQRTCQALAARGFSELSTLEVLPQVYNVRTVSLPPPDLGTGTD 255


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,059,425
Number of Sequences: 37866
Number of extensions: 110893
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 10
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.