Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC389787 Sequence: fasta or formatted (138aa) NCBI GI: 169179309
Description:

PREDICTED: similar to tumor protein, translationally-controlled 1

Referenced in:

Histamine

Other entries for this name:
alt mRNA [138aa] PREDICTED: similar to tumor protein, translationally-controlled 1
alt prot [138aa] PREDICTED: similar to tumor protein, translationally-controlled 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          7           2
 C cysteine            0.7          1           1
 D aspartate           5.8          8           2
 E glutamate          10.9         15           2
 F phenylalanine       5.1          7           2
 G glycine             9.4         13           2
 H histidine           2.9          4           2
 I isoleucine          6.5          9           1
 K lysine              8.0         11           2
 L leucine             5.8          8           2
 M methionine          5.1          7           1
 N asparagine          5.1          7           1
 P proline             3.6          5           1
 Q glutamine           2.2          3           1
 R arginine            2.9          4           1
 S serine              4.3          6           1
 T threonine           6.5          9           1
 V valine              6.5          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to tumor protein, translationall... 
LOC389787             1.000   PREDICTED: similar to tumor protein, translationall...
LOC389787             0.992   PREDICTED: similar to tumor protein, translationall...
TPT1                  0.946   tumor protein, translationally-controlled 1 
FLJ44635              0.588   hypothetical protein LOC392490 
FKSG2                 0.377   apoptosis inhibitor 
LOC643421             0.327   PREDICTED: similar to hCG1793821 
LOC643421             0.323   PREDICTED: similar to hCG1793821 
LOC643421             0.319   PREDICTED: similar to hCG1793821 
OLFM1                 0.019   olfactomedin related ER localized protein isoform 1 ...
DAAM1                 0.012   dishevelled-associated activator of morphogenesis 1 ...
ANXA7                 0.012   annexin VII isoform 2 
ANXA7                 0.012   annexin VII isoform 1 
TBC1D9B               0.008   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.008   TBC1 domain family, member 9B (with GRAM domain) iso...
APOB                  0.008   apolipoprotein B precursor 
RYR2                  0.008   cardiac muscle ryanodine receptor 
KIF3C                 0.008   kinesin family member 3C 
LOC392435             0.004   PREDICTED: similar to hCG1811022 
LOC392435             0.004   PREDICTED: similar to hCG1811022 
LOC392435             0.004   PREDICTED: similar to hCG1811022 
ANXA5                 0.004   annexin 5 
TMEM161B              0.004   transmembrane protein 161B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press