Guide to the Human Genome
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Name: TMEM161B Sequence: fasta or formatted (487aa) NCBI GI: 23503279
Description:

transmembrane protein 161B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         30           2
 C cysteine            1.6          8           1
 D aspartate           2.5         12           1
 E glutamate           4.9         24           3
 F phenylalanine       6.6         32           4
 G glycine             4.3         21           2
 H histidine           2.5         12           1
 I isoleucine          5.5         27           2
 K lysine              6.0         29           2
 L leucine            15.6         76           3
 M methionine          3.7         18           2
 N asparagine          2.9         14           1
 P proline             3.7         18           2
 Q glutamine           3.9         19           2
 R arginine            2.5         12           1
 S serine              6.4         31           2
 T threonine           7.8         38           2
 V valine              7.8         38           2
 W tryptophan          1.8          9           2
 Y tyrosine            3.9         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 161B 
TMEM161A              0.467   transmembrane protein 161A 
TMC8                  0.008   transmembrane channel-like 8 
SLC29A2               0.007   solute carrier family 29 (nucleoside transporters), ...
ALG8                  0.007   dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glu...
ALG8                  0.007   dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glu...
C4orf8                0.006   hypothetical protein LOC8603 
CNNM4                 0.005   cyclin M4 
GPR65                 0.005   G protein-coupled receptor 65 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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