Guide to the Human Genome
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Search of human proteins with 169178083

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169178083 PREDICTED: similar to tumor protein,
translationally-controlled 1 [Homo sapiens]
         (138 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169178083 PREDICTED: similar to tumor protein, translationall...   282   5e-77
gi|169179309 PREDICTED: similar to tumor protein, translationall...   282   5e-77
gi|169181065 PREDICTED: similar to tumor protein, translationall...   280   2e-76
gi|4507669 tumor protein, translationally-controlled 1 [Homo sap...   268   1e-72
gi|46409468 hypothetical protein LOC392490 [Homo sapiens]             176   4e-45
gi|117414135 apoptosis inhibitor [Homo sapiens]                       122   9e-29
gi|239752409 PREDICTED: similar to hCG1793821 [Homo sapiens]          109   8e-25
gi|239757896 PREDICTED: similar to hCG1793821 [Homo sapiens]          108   2e-24
gi|239746926 PREDICTED: similar to hCG1793821 [Homo sapiens]          107   3e-24
gi|17136143 olfactomedin related ER localized protein isoform 1 ...    30   0.63 
gi|21071077 dishevelled-associated activator of morphogenesis 1 ...    28   1.8  
gi|4809279 annexin VII isoform 2 [Homo sapiens]                        28   3.1  
gi|4502111 annexin VII isoform 1 [Homo sapiens]                        28   3.1  
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso...    27   4.1  
gi|45597175 TBC1 domain family, member 9B (with GRAM domain) iso...    27   4.1  
gi|105990532 apolipoprotein B precursor [Homo sapiens]                 27   5.4  
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]          27   7.0  
gi|41352705 kinesin family member 3C [Homo sapiens]                    27   7.0  
gi|169216998 PREDICTED: similar to hCG1811022 [Homo sapiens]           26   9.2  
gi|239752285 PREDICTED: similar to hCG1811022 [Homo sapiens]           26   9.2  
gi|239746796 PREDICTED: similar to hCG1811022 [Homo sapiens]           26   9.2  
gi|4502107 annexin 5 [Homo sapiens]                                    26   9.2  
gi|23503279 transmembrane protein 161B [Homo sapiens]                  26   9.2  

>gi|169178083 PREDICTED: similar to tumor protein,
           translationally-controlled 1 [Homo sapiens]
          Length = 138

 Score =  282 bits (722), Expect = 5e-77
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD
Sbjct: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120
           YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED
Sbjct: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120

Query: 121 GVTPYMIFFRDGLETEKC 138
           GVTPYMIFFRDGLETEKC
Sbjct: 121 GVTPYMIFFRDGLETEKC 138


>gi|169179309 PREDICTED: similar to tumor protein,
           translationally-controlled 1 [Homo sapiens]
          Length = 138

 Score =  282 bits (722), Expect = 5e-77
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD
Sbjct: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120
           YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED
Sbjct: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120

Query: 121 GVTPYMIFFRDGLETEKC 138
           GVTPYMIFFRDGLETEKC
Sbjct: 121 GVTPYMIFFRDGLETEKC 138


>gi|169181065 PREDICTED: similar to tumor protein,
           translationally-controlled 1 [Homo sapiens]
          Length = 138

 Score =  280 bits (717), Expect = 2e-76
 Identities = 137/138 (99%), Positives = 137/138 (99%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD
Sbjct: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120
           YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNY FFIGENMNPDGMVALLDYGED
Sbjct: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYHFFIGENMNPDGMVALLDYGED 120

Query: 121 GVTPYMIFFRDGLETEKC 138
           GVTPYMIFFRDGLETEKC
Sbjct: 121 GVTPYMIFFRDGLETEKC 138


>gi|4507669 tumor protein, translationally-controlled 1 [Homo
           sapiens]
          Length = 172

 Score =  268 bits (684), Expect = 1e-72
 Identities = 130/138 (94%), Positives = 133/138 (96%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           MVSRTEGNIDDSLIGGN SAEGPEGEGTESTVIT VD+VMNHHLQETSFTKEA+KKYIKD
Sbjct: 35  MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKD 94

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120
           YMKSIKGKLEE RPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDY ED
Sbjct: 95  YMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYRED 154

Query: 121 GVTPYMIFFRDGLETEKC 138
           GVTPYMIFF+DGLE EKC
Sbjct: 155 GVTPYMIFFKDGLEMEKC 172


>gi|46409468 hypothetical protein LOC392490 [Homo sapiens]
          Length = 140

 Score =  176 bits (447), Expect = 4e-45
 Identities = 88/99 (88%), Positives = 92/99 (92%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           +VSRTEGNI DSLIGGN SAEGPEG+GTESTVIT VD VMNHHLQETSFTKEA+ K IKD
Sbjct: 40  IVSRTEGNIFDSLIGGNASAEGPEGKGTESTVITGVDSVMNHHLQETSFTKEAYNKCIKD 99

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQ 99
           YMKSIKGKLEE RP+RVKPFMTGAAEQIKHILANFKNYQ
Sbjct: 100 YMKSIKGKLEEQRPKRVKPFMTGAAEQIKHILANFKNYQ 138


>gi|117414135 apoptosis inhibitor [Homo sapiens]
          Length = 127

 Score =  122 bits (306), Expect = 9e-29
 Identities = 63/96 (65%), Positives = 73/96 (76%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           M+S+T GN DDSLIG N S+E  E E TEST+IT+VD+V NHHLQE+ FTKEA+KKYIKD
Sbjct: 23  MLSKTTGNTDDSLIGRNSSSESTEDEVTESTIITSVDIVTNHHLQESIFTKEAYKKYIKD 82

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFK 96
           YMKSI  KLEE RPERVK F+TG   +    L  FK
Sbjct: 83  YMKSINEKLEEQRPERVKLFITGMKNKSSTSLLIFK 118


>gi|239752409 PREDICTED: similar to hCG1793821 [Homo sapiens]
          Length = 131

 Score =  109 bits (272), Expect = 8e-25
 Identities = 68/134 (50%), Positives = 76/134 (56%), Gaps = 37/134 (27%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           +VSRTE NID SLIG N S E PEGE T+STVIT VD VM++HLQETSFTKEA       
Sbjct: 31  IVSRTEDNIDGSLIGRNASTEVPEGEETQSTVITGVD-VMHYHLQETSFTKEASHP---- 85

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120
                                            NFK YQFFIGEN N D +VALLDY ED
Sbjct: 86  --------------------------------CNFKIYQFFIGENKNLDSVVALLDYCED 113

Query: 121 GVTPYMIFFRDGLE 134
            V  +M+FF+D LE
Sbjct: 114 TVILHMLFFKDDLE 127


>gi|239757896 PREDICTED: similar to hCG1793821 [Homo sapiens]
          Length = 131

 Score =  108 bits (269), Expect = 2e-24
 Identities = 68/134 (50%), Positives = 75/134 (55%), Gaps = 37/134 (27%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           +VSRTE NID SLIG N S E PEGE T+STVIT VD VM++HLQETSFTKEA       
Sbjct: 31  IVSRTEDNIDGSLIGRNASTEVPEGEETQSTVITGVD-VMHYHLQETSFTKEASHP---- 85

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120
                                            NFK YQFFIGEN N D +VALLDY ED
Sbjct: 86  --------------------------------CNFKIYQFFIGENKNLDSVVALLDYCED 113

Query: 121 GVTPYMIFFRDGLE 134
            V  +M+FF D LE
Sbjct: 114 TVILHMLFFXDDLE 127


>gi|239746926 PREDICTED: similar to hCG1793821 [Homo sapiens]
          Length = 131

 Score =  107 bits (267), Expect = 3e-24
 Identities = 67/134 (50%), Positives = 75/134 (55%), Gaps = 37/134 (27%)

Query: 1   MVSRTEGNIDDSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKD 60
           +VSRTE N D SLIG N S E PEGE T+STVIT VD VM++HLQETSFTKEA       
Sbjct: 31  IVSRTEDNTDGSLIGRNASTEVPEGEETQSTVITGVD-VMHYHLQETSFTKEASHP---- 85

Query: 61  YMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGED 120
                                            NFK YQFFIGEN N D +VALLDY ED
Sbjct: 86  --------------------------------CNFKIYQFFIGENKNLDSVVALLDYCED 113

Query: 121 GVTPYMIFFRDGLE 134
            V  +M+FF+D LE
Sbjct: 114 TVILHMLFFKDDLE 127


>gi|17136143 olfactomedin related ER localized protein isoform 1
           [Homo sapiens]
          Length = 467

 Score = 30.0 bits (66), Expect = 0.63
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 51  KEAHKKYIKDYMKSIKGKLEELRP 74
           +E+HK+++    K+IK K++ELRP
Sbjct: 122 EESHKQHLARQFKAIKAKMDELRP 145


>gi|21071077 dishevelled-associated activator of morphogenesis 1
           [Homo sapiens]
          Length = 1078

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 55  KKYIKDYMKSIKGKLEELRPERVKPFMTGAAEQIKHILANFKNY 98
           KK   + +  +K K+E +R    + F +GA +Q+  ++  F NY
Sbjct: 780 KKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNY 823


>gi|4809279 annexin VII isoform 2 [Homo sapiens]
          Length = 488

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 11  DSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHK-KYIKDYMKSIK--- 66
           D++    +  +  +G GT+   I  VDVV N    +    K A K  Y KD +K +K   
Sbjct: 186 DAIRDAEILRKAMKGFGTDEQAI--VDVVANRSNDQRQKIKAAFKTSYGKDLIKDLKSEL 243

Query: 67  -GKLEEL 72
            G +EEL
Sbjct: 244 SGNMEEL 250


>gi|4502111 annexin VII isoform 1 [Homo sapiens]
          Length = 466

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 11  DSLIGGNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHK-KYIKDYMKSIK--- 66
           D++    +  +  +G GT+   I  VDVV N    +    K A K  Y KD +K +K   
Sbjct: 164 DAIRDAEILRKAMKGFGTDEQAI--VDVVANRSNDQRQKIKAAFKTSYGKDLIKDLKSEL 221

Query: 67  -GKLEEL 72
            G +EEL
Sbjct: 222 SGNMEEL 228


>gi|45597177 TBC1 domain family, member 9B (with GRAM domain) isoform
            b [Homo sapiens]
          Length = 1233

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 16   GNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKDYMKSIKGKLEELRPE 75
            G+ S E  E +GT S           H+L+  +  KEA K+ IKD  K  + +  EL   
Sbjct: 964  GSGSEERGEEKGTSSPDY-------RHYLRMWAKEKEAQKETIKDLPKMNQEQFIELCKT 1016

Query: 76   RVKPFMTGAAEQ-IKHILANFKNYQFFIGE 104
                F     EQ + H +A   +    IGE
Sbjct: 1017 LYNMFSEDPMEQDLYHAIATVASLLLRIGE 1046


>gi|45597175 TBC1 domain family, member 9B (with GRAM domain) isoform
            a [Homo sapiens]
          Length = 1250

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 16   GNVSAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKDYMKSIKGKLEELRPE 75
            G+ S E  E +GT S           H+L+  +  KEA K+ IKD  K  + +  EL   
Sbjct: 981  GSGSEERGEEKGTSSPDY-------RHYLRMWAKEKEAQKETIKDLPKMNQEQFIELCKT 1033

Query: 76   RVKPFMTGAAEQ-IKHILANFKNYQFFIGE 104
                F     EQ + H +A   +    IGE
Sbjct: 1034 LYNMFSEDPMEQDLYHAIATVASLLLRIGE 1063


>gi|105990532 apolipoprotein B precursor [Homo sapiens]
          Length = 4563

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 23   PEGEGTESTV---ITAVDVVMNHHLQETSFTKEAHKKYIKDYMKSIKGKLEELRPERVKP 79
            P+G+G E       TA +++ +  +        A KK I DY +  + KL++   +    
Sbjct: 4458 PDGKGKEKIAELSATAQEIIKSQAI--------ATKKIISDYHQQFRYKLQDFSDQLSDY 4509

Query: 80   FMTGAAEQIKHILANFKNYQFFI 102
            +    AE  + I  + +NY  F+
Sbjct: 4510 YEKFIAESKRLIDLSIQNYHTFL 4532


>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
          Length = 4967

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 65   IKGKLEELRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYGEDGVTP 124
            +K  LE ++   ++ F+  AAE ++  + N K  QF    N  P G+  +++Y    + P
Sbjct: 3046 MKTGLESVK-SALRAFLDNAAEDLEKTMENLKQGQFTHTRN-QPKGVTQIINYTTVALLP 3103

Query: 125  YM 126
             +
Sbjct: 3104 ML 3105


>gi|41352705 kinesin family member 3C [Homo sapiens]
          Length = 793

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 23  PEGEGTESTVITAVDVVMNHHLQETSFTKEAHKKYIKDYMKSIKGKLEE 71
           PEG   E+ V    D   N+H       + A +K +++Y++  K +LEE
Sbjct: 422 PEGPVIEAWVAEEEDDNNNNHRPPQPILESALEKNMENYLQEQKERLEE 470


>gi|169216998 PREDICTED: similar to hCG1811022 [Homo sapiens]
          Length = 334

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 19 SAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKK 56
          S  G EG+ TE T +T    V++HH   +     A +K
Sbjct: 11 SPSGNEGDVTELTCLTVYYPVLSHHASGSKSKLRAREK 48


>gi|239752285 PREDICTED: similar to hCG1811022 [Homo sapiens]
          Length = 334

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 19 SAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKK 56
          S  G EG+ TE T +T    V++HH   +     A +K
Sbjct: 11 SPSGNEGDVTELTCLTVYYPVLSHHASGSKSKLRAREK 48


>gi|239746796 PREDICTED: similar to hCG1811022 [Homo sapiens]
          Length = 334

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 19 SAEGPEGEGTESTVITAVDVVMNHHLQETSFTKEAHKK 56
          S  G EG+ TE T +T    V++HH   +     A +K
Sbjct: 11 SPSGNEGDVTELTCLTVYYPVLSHHASGSKSKLRAREK 48


>gi|4502107 annexin 5 [Homo sapiens]
          Length = 320

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 24  EGEGT-ESTVITAVDVVMNHHLQETS--FTKEAHKKYIKDYMKSIKGKLEELRPERVKPF 80
           +G GT E +++T +    N   QE S  F     +  + D    + GK E+L    +KP 
Sbjct: 29  KGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPS 88

Query: 81  MTGAAEQIKHIL 92
               A ++KH L
Sbjct: 89  RLYDAYELKHAL 100


>gi|23503279 transmembrane protein 161B [Homo sapiens]
          Length = 487

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 9   IDDSLIGGNVSAEGPEGEGTESTVITAVDVVMN 41
           +D+SL+  +V +E P  EG     +T + V ++
Sbjct: 412 VDNSLLSNSVYSELPSAEGKMKVTVTQITVALS 444


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,961,468
Number of Sequences: 37866
Number of extensions: 191187
Number of successful extensions: 517
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 27
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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