Guide to the Human Genome
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Name: LOC100130673 Sequence: fasta or formatted (271aa) NCBI GI: 169172220
Description:

PREDICTED: similar to hCG1804306

Not currently referenced in the text

Other entries for this name:
alt mRNA {271aa} PREDICTED: similar to hCG1804306
alt mRNA {271aa} PREDICTED: similar to hCG1804306
alt mRNA {271aa} PREDICTED: similar to hCG1804306
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         29           3
 C cysteine            2.2          6           1
 D aspartate           4.8         13           2
 E glutamate           4.1         11           2
 F phenylalanine       2.2          6           1
 G glycine             7.4         20           1
 H histidine           2.2          6           1
 I isoleucine          2.6          7           1
 K lysine              5.2         14           2
 L leucine            10.0         27           3
 M methionine          2.6          7           1
 N asparagine          2.6          7           1
 P proline             5.5         15           2
 Q glutamine           3.7         10           2
 R arginine            3.7         10           2
 S serine             10.7         29           3
 T threonine           4.8         13           2
 V valine             10.7         29           2
 W tryptophan          3.3          9           2
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1804306 
LOC100130673          1.000   PREDICTED: similar to hCG1804306 
LOC100130673          1.000   PREDICTED: similar to hCG1804306 
LOC100130673          1.000   PREDICTED: similar to hCG1804306 
PRPS2                 0.170   phosphoribosyl pyrophosphate synthetase 2 isoform 2 [...
PRPS1                 0.161   phosphoribosyl pyrophosphate synthetase 1 
PRPS2                 0.161   phosphoribosyl pyrophosphate synthetase 2 isoform 1 ...
PRPS1L1               0.157   phosphoribosyl pyrophosphate synthetase 1-like 1 [Ho...
PRPSAP2               0.044   phosphoribosyl pyrophosphate synthetase-associated pr...
GEMIN4                0.011   gemin 4 
KCNQ5                 0.010   potassium voltage-gated channel, KQT-like subfamily,...
TRIP13                0.008   thyroid hormone receptor interactor 13 
LOC100292273          0.006   PREDICTED: similar to hCG2013141 
LOC100291054          0.006   PREDICTED: hypothetical protein XP_002348134 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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