Guide to the Human Genome
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Name: LOC100128372 Sequence: fasta or formatted (88aa) NCBI GI: 169169380
Description:

PREDICTED: similar to hCG2040192

Not currently referenced in the text

Other entries for this name:
alt mRNA {88aa} PREDICTED: similar to hCG2040192
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.9         14           1
 C cysteine            0.0          0           0
 D aspartate           6.8          6           1
 E glutamate           9.1          8           2
 F phenylalanine       0.0          0           0
 G glycine            12.5         11           1
 H histidine           0.0          0           0
 I isoleucine          1.1          1           1
 K lysine             19.3         17           2
 L leucine             2.3          2           1
 M methionine          1.1          1           1
 N asparagine          3.4          3           2
 P proline             4.5          4           1
 Q glutamine           4.5          4           1
 R arginine            6.8          6           2
 S serine              4.5          4           1
 T threonine           4.5          4           1
 V valine              2.3          2           1
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040192 
LOC100128372          1.000   PREDICTED: similar to hCG2040192 
HMGN2                 0.660   high-mobility group nucleosomal binding domain 2 [Hom...
LOC648822             0.627   PREDICTED: similar to hCG2040565 
LOC648822             0.627   PREDICTED: similar to hCG2040565 
LOC648822             0.627   PREDICTED: similar to hCG2040565 
LOC729505             0.595   PREDICTED: hypothetical protein 
LOC729505             0.595   PREDICTED: hypothetical protein 
LOC729505             0.595   PREDICTED: hypothetical protein 
LOC646853             0.575   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.575   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.575   PREDICTED: similar to high-mobility group nucleosom...
LOC644992             0.556   PREDICTED: hypothetical protein 
LOC729687             0.556   PREDICTED: similar to high-mobility group nucleosom...
LOC644992             0.556   PREDICTED: hypothetical protein 
LOC729687             0.556   PREDICTED: similar to high-mobility group nucleosom...
LOC644992             0.556   PREDICTED: hypothetical protein 
LOC729687             0.556   PREDICTED: similar to high-mobility group nucleosom...
HMGN4                 0.556   high mobility group nucleosomal binding domain 4 [Ho...
LOC646049             0.542   PREDICTED: hypothetical protein 
LOC646049             0.542   PREDICTED: hypothetical protein 
LOC646049             0.542   PREDICTED: hypothetical protein 
LOC100293829          0.542   PREDICTED: similar to hCG2040565 
LOC100288691          0.542   PREDICTED: similar to hCG2040565 
LOC100288691          0.542   PREDICTED: hypothetical protein XP_002343066 
LOC100292625          0.477   PREDICTED: similar to hCG2040565 
LOC100291244          0.477   PREDICTED: hypothetical protein XP_002348261 
LOC100287582          0.477   PREDICTED: hypothetical protein XP_002342251 
LOC645263             0.464   PREDICTED: hypothetical protein 
LOC645263             0.464   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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