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Search of human proteins with 169165663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169165663 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165663 PREDICTED: hypothetical protein isoform 1 [Homo sap... 272 5e-74
gi|169166006 PREDICTED: hypothetical protein isoform 1 [Homo sap... 272 5e-74
gi|169165207 PREDICTED: hypothetical protein isoform 1 [Homo sap... 272 5e-74
gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo sap... 254 1e-68
gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo sap... 254 1e-68
gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo sap... 254 1e-68
gi|116686120 periaxin isoform 2 [Homo sapiens] 30 0.42
gi|8922633 high-mobility group 20A [Homo sapiens] 30 0.72
gi|62526045 zinc finger protein 638 [Homo sapiens] 28 2.1
gi|21626468 zinc finger protein 638 [Homo sapiens] 28 2.1
gi|239755954 PREDICTED: hypothetical protein [Homo sapiens] 27 6.1
gi|239750480 PREDICTED: hypothetical protein [Homo sapiens] 27 6.1
gi|197927454 DEK oncogene isoform 2 [Homo sapiens] 27 6.1
gi|87299628 biorientation of chromosomes in cell division 1-like... 27 6.1
gi|239757360 PREDICTED: hypothetical protein [Homo sapiens] 26 8.0
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 26 8.0
gi|157674358 leucine rich repeat containing 50 [Homo sapiens] 26 8.0
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 26 8.0
>gi|169165663 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 132
Score = 272 bits (696), Expect = 5e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV 120
PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV
Sbjct: 61 PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV 120
Query: 121 VLKGKDKNKKLV 132
VLKGKDKNKKLV
Sbjct: 121 VLKGKDKNKKLV 132
>gi|169166006 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 132
Score = 272 bits (696), Expect = 5e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV 120
PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV
Sbjct: 61 PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV 120
Query: 121 VLKGKDKNKKLV 132
VLKGKDKNKKLV
Sbjct: 121 VLKGKDKNKKLV 132
>gi|169165207 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 132
Score = 272 bits (696), Expect = 5e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV 120
PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV
Sbjct: 61 PQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRV 120
Query: 121 VLKGKDKNKKLV 132
VLKGKDKNKKLV
Sbjct: 121 VLKGKDKNKKLV 132
>gi|169165661 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 254 bits (650), Expect = 1e-68
Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85
PQN EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
Query: 86 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
>gi|169166004 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 254 bits (650), Expect = 1e-68
Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85
PQN EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
Query: 86 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
>gi|169165205 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 167
Score = 254 bits (650), Expect = 1e-68
Identities = 132/167 (79%), Positives = 132/167 (79%), Gaps = 35/167 (20%)
Query: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD
Sbjct: 1 MRKAEREQRSWWGVTGPMYEADVSSASSFAIYPFTCLRLGNTYFIVLIQVLADGREETPD 60
Query: 61 PQN-----------------------------------EDESAGKNDGWVKGRGNTKAQR 85
PQN EDESAGKNDGWVKGRGNTKAQR
Sbjct: 61 PQNDLNDFTRARVTPVLQTHVSQIQLAHCFSPPSSISVEDESAGKNDGWVKGRGNTKAQR 120
Query: 86 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 132
RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV
Sbjct: 121 RRLHFRLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKKLV 167
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 30.4 bits (67), Expect = 0.42
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 37 LRLGNTYFIVLIQVLADGREETPDPQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYI 96
LRL F V +G +P+ + E+E G +G +R R+ RLPR
Sbjct: 1331 LRLPRVGFSQSEMVTGEG-SPSPEEEEEEEEEGSGEG-------ASGRRGRVRVRLPRV- 1381
Query: 97 KKANSLAFPQATRKGRSDSPAPRVVLKGK 125
LA P +G+ AP+ ++ K
Sbjct: 1382 ----GLAAPSKASRGQEGDAAPKSPVREK 1406
>gi|8922633 high-mobility group 20A [Homo sapiens]
Length = 347
Score = 29.6 bits (65), Expect = 0.72
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 47 LIQVLADGREETPDPQNEDESAGKNDGWVKGRGNTKAQR-------------RRLHFRLP 93
L+Q + E + ++EDE K GW KGR K R R ++ R
Sbjct: 60 LLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERRE 119
Query: 94 RYIKKANSLAFPQATR 109
+ K + FP+ TR
Sbjct: 120 QLRAKRPEVPFPEITR 135
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 28.1 bits (61), Expect = 2.1
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 13 GVTGPMYEA--DVSSASSFA-IYPFTCLRLGNTYFIVLIQVLADGREETPDPQNEDESAG 69
G+T M EA +V + + I P TC+ + L+ + G E+T D +N E G
Sbjct: 1253 GITQTMVEAVAEVEKNETVSEILPSTCI-------VTLVPGIPTGDEKTVDKKNISEKKG 1305
Query: 70 KNDGWVKGRGNTKAQRRRL 88
D + NTK R L
Sbjct: 1306 NMDEKEEKEFNTKETRMDL 1324
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 28.1 bits (61), Expect = 2.1
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 13 GVTGPMYEA--DVSSASSFA-IYPFTCLRLGNTYFIVLIQVLADGREETPDPQNEDESAG 69
G+T M EA +V + + I P TC+ + L+ + G E+T D +N E G
Sbjct: 1253 GITQTMVEAVAEVEKNETVSEILPSTCI-------VTLVPGIPTGDEKTVDKKNISEKKG 1305
Query: 70 KNDGWVKGRGNTKAQRRRL 88
D + NTK R L
Sbjct: 1306 NMDEKEEKEFNTKETRMDL 1324
>gi|239755954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 26.6 bits (57), Expect = 6.1
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 62 QNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAP 118
+NE SAG V R T+ Q+R H+ L R + SL+ P +T + SP P
Sbjct: 200 RNEGSSAGAGQSLVLHRLPTRLQKRLAHWPLGRPPAVSASLSTP-STEATVTRSPHP 255
>gi|239750480 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 26.6 bits (57), Expect = 6.1
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 62 QNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSPAP 118
+NE SAG V R T+ Q+R H+ L R + SL+ P +T + SP P
Sbjct: 200 RNEGSSAGAGQSLVLHRLPTRLQKRLAHWPLGRPPAVSASLSTP-STEATVTRSPHP 255
>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
Length = 341
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 55 REETPDPQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSL 102
REE+ + ++ED+ + + KG+G + R+HF L + KK + L
Sbjct: 29 REESEEEEDEDDEEEEEEE--KGKGQKLCEIERIHFFLSK--KKTDEL 72
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 53 DGREETPDPQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGR 112
D +E+ D + E+E + G R T+++ +R +L IK+ ++ P A +G+
Sbjct: 2980 DKKEQESDEEEEEEEEDEPSG-ATTRSTTRSEAQRSKTQLSPSIKRKREVSPPGARTRGQ 3038
>gi|239757360 PREDICTED: hypothetical protein [Homo sapiens]
Length = 535
Score = 26.2 bits (56), Expect = 8.0
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 36 CLRLGNTYFIVLIQVLADGREETPDPQNEDESAGKNDGWVKGRGNTKAQRRRLHFRL 92
CL++G + + + G +E P+ E+E G W +G + R H L
Sbjct: 479 CLKIGLSAWALRCAFGQSGGQEERSPREEEEEEGGKAKWRLRKGRCWQRVLRTHLEL 535
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 26.2 bits (56), Expect = 8.0
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 56 EETPDPQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDS 115
+E+P P++ S G+ G G + +RRR +++ S A R R
Sbjct: 361 KESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRR--------RRSRSSASAPRRRGRRRPR 412
Query: 116 PAP 118
PAP
Sbjct: 413 PAP 415
>gi|157674358 leucine rich repeat containing 50 [Homo sapiens]
Length = 725
Score = 26.2 bits (56), Expect = 8.0
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 57 ETPDPQNEDESAGKNDGWVKGRGNTKAQRRRLHFRLPRYIKKANSLAFPQATRKGRSDSP 116
E P + A + DG + G A+ L P +K + P+ T + P
Sbjct: 392 EKPSGEEPPVEAKREDGGPEPEGTLPAET--LLLSSPVEVKGEDGDGEPEGTLPAEAPPP 449
Query: 117 APRVVLKGKDKNKK 130
P V +KG+D +++
Sbjct: 450 PPPVEVKGEDGDQE 463
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 26.2 bits (56), Expect = 8.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 91 RLPRYIKKANSLAFPQATRKGRSDSPAPRVVLKGKDKNKK 130
R R + A+S +R+GRS SP PR + + + ++++
Sbjct: 1740 RSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRR 1779
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,398,908
Number of Sequences: 37866
Number of extensions: 225246
Number of successful extensions: 661
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 30
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.