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Search of human proteins with 169163248
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens] 392 e-110
gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens] 390 e-109
gi|239747737 PREDICTED: similar to hCG1644578 [Homo sapiens] 165 2e-41
gi|10047102 ribosomal protein L24-like [Homo sapiens] 136 9e-33
gi|17402893 phosphoserine aminotransferase 1 isoform 1 [Homo sap... 122 2e-28
gi|10863955 phosphoserine aminotransferase 1 isoform 2 [Homo sap... 122 2e-28
gi|169213020 PREDICTED: similar to ribosomal protein L24-like [H... 119 1e-27
gi|89047474 PREDICTED: similar to ribosomal protein L24-like [Ho... 119 1e-27
gi|27485363 PREDICTED: similar to ribosomal protein L24-like [Ho... 119 1e-27
gi|4506619 ribosomal protein L24 [Homo sapiens] 55 3e-08
gi|37059814 ETAA16 protein [Homo sapiens] 27 7.6
gi|164519084 RAB GTPase activating protein 1 [Homo sapiens] 27 9.9
gi|190194429 zinc finger protein 267 [Homo sapiens] 27 9.9
gi|47271464 zinc finger protein 607 [Homo sapiens] 27 9.9
>gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens]
Length = 184
Score = 392 bits (1008), Expect = e-110
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD
Sbjct: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
Query: 61 KELTVDNSFEFEKHHKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLC 120
KELTVDNSFEFEKHHKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLC
Sbjct: 61 KELTVDNSFEFEKHHKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLC 120
Query: 121 KKCLKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDSTPGTSPLQLRCV 180
KKCLKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDSTPGTSPLQLRCV
Sbjct: 121 KKCLKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDSTPGTSPLQLRCV 180
Query: 181 MLHK 184
MLHK
Sbjct: 181 MLHK 184
>gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens]
Length = 184
Score = 390 bits (1003), Expect = e-109
Identities = 183/184 (99%), Positives = 184/184 (100%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD
Sbjct: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
Query: 61 KELTVDNSFEFEKHHKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLC 120
KELTVDNSFEFEKHHKGIGISVLEMNNRSS+FTKIINTTENLVWELLAIPNNYCTRSFLC
Sbjct: 61 KELTVDNSFEFEKHHKGIGISVLEMNNRSSDFTKIINTTENLVWELLAIPNNYCTRSFLC 120
Query: 121 KKCLKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDSTPGTSPLQLRCV 180
KKCLKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDSTPGTSPLQLRCV
Sbjct: 121 KKCLKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPDSTPGTSPLQLRCV 180
Query: 181 MLHK 184
MLHK
Sbjct: 181 MLHK 184
>gi|239747737 PREDICTED: similar to hCG1644578 [Homo sapiens]
Length = 161
Score = 165 bits (417), Expect = 2e-41
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD
Sbjct: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
Query: 61 KELTVDNSFEFEK 73
KELTVDNSFEFEK
Sbjct: 61 KELTVDNSFEFEK 73
>gi|10047102 ribosomal protein L24-like [Homo sapiens]
Length = 163
Score = 136 bits (343), Expect = 9e-33
Identities = 63/73 (86%), Positives = 65/73 (89%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
M IEKCYFCSG IYPGH MMFV+N+CKVFRFC SK HKNFKKKRNPRKV WTKAF KAA
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 61 KELTVDNSFEFEK 73
KELTVDNSFEFEK
Sbjct: 61 KELTVDNSFEFEK 73
>gi|17402893 phosphoserine aminotransferase 1 isoform 1 [Homo
sapiens]
Length = 370
Score = 122 bits (305), Expect = 2e-28
Identities = 65/105 (61%), Positives = 76/105 (72%), Gaps = 12/105 (11%)
Query: 75 HKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLCKKC----------- 123
+KG+GISVLEM++RSS+F KIIN TENLV ELLA+P+NY C
Sbjct: 32 YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI 91
Query: 124 -LKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPD 167
LKAGRCA+YVVTGAWSAKAAE +KKF +NI +PKLGSY KIPD
Sbjct: 92 GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPD 136
>gi|10863955 phosphoserine aminotransferase 1 isoform 2 [Homo
sapiens]
Length = 324
Score = 122 bits (305), Expect = 2e-28
Identities = 65/105 (61%), Positives = 76/105 (72%), Gaps = 12/105 (11%)
Query: 75 HKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLCKKC----------- 123
+KG+GISVLEM++RSS+F KIIN TENLV ELLA+P+NY C
Sbjct: 32 YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI 91
Query: 124 -LKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPD 167
LKAGRCA+YVVTGAWSAKAAE +KKF +NI +PKLGSY KIPD
Sbjct: 92 GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPD 136
>gi|169213020 PREDICTED: similar to ribosomal protein L24-like
[Homo sapiens]
Length = 187
Score = 119 bits (299), Expect = 1e-27
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
M IEKCYFCSG IYPG+ M+F+ N+CKVF FC SK HK+FKKK NPRKV TK F KAA
Sbjct: 1 MRIEKCYFCSGPIYPGYDMLFIHNDCKVFGFCKSKCHKHFKKKCNPRKVRRTKPFQKAAG 60
Query: 61 KELTVDNSFEFEKH 74
KELTVDNSFEF+KH
Sbjct: 61 KELTVDNSFEFDKH 74
>gi|89047474 PREDICTED: similar to ribosomal protein L24-like
[Homo sapiens]
Length = 187
Score = 119 bits (299), Expect = 1e-27
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
M IEKCYFCSG IYPG+ M+F+ N+CKVF FC SK HK+FKKK NPRKV TK F KAA
Sbjct: 1 MRIEKCYFCSGPIYPGYDMLFIHNDCKVFGFCKSKCHKHFKKKCNPRKVRRTKPFQKAAG 60
Query: 61 KELTVDNSFEFEKH 74
KELTVDNSFEF+KH
Sbjct: 61 KELTVDNSFEFDKH 74
>gi|27485363 PREDICTED: similar to ribosomal protein L24-like
[Homo sapiens]
Length = 187
Score = 119 bits (299), Expect = 1e-27
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
M IEKCYFCSG IYPG+ M+F+ N+CKVF FC SK HK+FKKK NPRKV TK F KAA
Sbjct: 1 MRIEKCYFCSGPIYPGYDMLFIHNDCKVFGFCKSKCHKHFKKKCNPRKVRRTKPFQKAAG 60
Query: 61 KELTVDNSFEFEKH 74
KELTVDNSFEF+KH
Sbjct: 61 KELTVDNSFEFDKH 74
>gi|4506619 ribosomal protein L24 [Homo sapiens]
Length = 157
Score = 55.1 bits (131), Expect = 3e-08
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 28/171 (16%)
Query: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
M +E C F IYPGH + + + KVF+F N+K F KRNPR++ WT + +
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRR--- 57
Query: 61 KELTVDNSFEFEKHHKGIGISVLEMNNRSS-NFTKIIN--------TTENLVWELLAIPN 111
KH KG + + R + F + I N E+
Sbjct: 58 ------------KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQR 105
Query: 112 NYCTRSFLCKKCLKAGRCANYVVTGAWSA--KAAEASKKFEIVNISYPKLG 160
R+ K+ KA + + A A KAA K + V +S P++G
Sbjct: 106 EQAIRA--AKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVG 154
>gi|37059814 ETAA16 protein [Homo sapiens]
Length = 926
Score = 27.3 bits (59), Expect = 7.6
Identities = 17/61 (27%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 42 KKRNPRKVGWTKAFWKAADKELTVDNSFEFEKHHKGIGISVLEMNNRSSNFTKIINTTEN 101
K ++ K+ TK ++ ++EL + + +F+K+ + + + + E N R+ +FT++I+ TE
Sbjct: 170 KGKSRAKISCTKLKTQSQEEEL-MKLAKQFDKNMEELDV-IQEQNKRNYDFTQMISETEI 227
Query: 102 L 102
L
Sbjct: 228 L 228
>gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]
Length = 1069
Score = 26.9 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 131 NYVVTGAWSAKAAEASKKFEIVNISYPK 158
+YV+TG+W+ K S F++VN PK
Sbjct: 378 SYVITGSWNPK----SPHFQVVNEETPK 401
>gi|190194429 zinc finger protein 267 [Homo sapiens]
Length = 743
Score = 26.9 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 116 RSFLCKKCLKAGRCANYVV------TGAWSAKAAEASKKF 149
+ + CK+C KA RC++Y+ TG K E K F
Sbjct: 406 KPYKCKECGKAFRCSSYLTKHKRIHTGEKPYKCKECGKAF 445
>gi|47271464 zinc finger protein 607 [Homo sapiens]
Length = 696
Score = 26.9 bits (58), Expect = 9.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 116 RSFLCKKCLKAGRCANYVV 134
+ F CK+C K+ RCA+Y+V
Sbjct: 447 KPFECKECGKSFRCASYLV 465
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.133 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,311,654
Number of Sequences: 37866
Number of extensions: 281416
Number of successful extensions: 578
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 15
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.