Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 169162671

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens]          352   1e-97
gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens]          352   1e-97
gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens]          337   3e-93
gi|5031749 high-mobility group nucleosomal binding domain 2 [Hom...   167   6e-42
gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens]          163   8e-41
gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]          163   8e-41
gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo ...   163   8e-41
gi|169165461 PREDICTED: hypothetical protein [Homo sapiens]           161   3e-40
gi|169165899 PREDICTED: hypothetical protein [Homo sapiens]           161   3e-40
gi|169165087 PREDICTED: hypothetical protein [Homo sapiens]           161   3e-40
gi|169165669 PREDICTED: similar to high-mobility group nucleosom...   153   8e-38
gi|113415254 PREDICTED: similar to high-mobility group nucleosom...   153   8e-38
gi|113414676 PREDICTED: similar to high-mobility group nucleosom...   153   8e-38
gi|169209024 PREDICTED: similar to high-mobility group nucleosom...   149   9e-37
gi|113425750 PREDICTED: similar to high-mobility group nucleosom...   149   9e-37
gi|113425298 PREDICTED: similar to high-mobility group nucleosom...   149   9e-37
gi|169202834 PREDICTED: hypothetical protein [Homo sapiens]           147   4e-36
gi|89034591 PREDICTED: hypothetical protein [Homo sapiens]            147   4e-36
gi|89033815 PREDICTED: hypothetical protein [Homo sapiens]            147   4e-36
gi|10835240 high mobility group nucleosomal binding domain 4 [Ho...   146   1e-35
gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens]          145   1e-35
gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo ...   145   1e-35
gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo ...   145   1e-35
gi|169163639 PREDICTED: hypothetical protein [Homo sapiens]           143   7e-35
gi|88954992 PREDICTED: hypothetical protein [Homo sapiens]            143   7e-35
gi|88953166 PREDICTED: hypothetical protein [Homo sapiens]            143   7e-35
gi|169208981 PREDICTED: hypothetical protein [Homo sapiens]           126   1e-29
gi|89039047 PREDICTED: hypothetical protein [Homo sapiens]            126   1e-29
gi|89038348 PREDICTED: hypothetical protein [Homo sapiens]            126   1e-29
gi|169168547 PREDICTED: similar to hCG2040192 [Homo sapiens]          121   3e-28

>gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 176

 Score =  352 bits (903), Expect = 1e-97
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MRLEKLARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPK 60
           MRLEKLARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPK
Sbjct: 1   MRLEKLARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPK 60

Query: 61  KAPAKKGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLL 120
           KAPAKKGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLL
Sbjct: 61  KAPAKKGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLL 120

Query: 121 VSVQFEILFCIKFYKNADFLNIFFFFLSYVVSTQNTSLLLLGEGANVTNRMSLKLD 176
           VSVQFEILFCIKFYKNADFLNIFFFFLSYVVSTQNTSLLLLGEGANVTNRMSLKLD
Sbjct: 121 VSVQFEILFCIKFYKNADFLNIFFFFLSYVVSTQNTSLLLLGEGANVTNRMSLKLD 176


>gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 176

 Score =  352 bits (903), Expect = 1e-97
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MRLEKLARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPK 60
           MRLEKLARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPK
Sbjct: 1   MRLEKLARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPK 60

Query: 61  KAPAKKGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLL 120
           KAPAKKGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLL
Sbjct: 61  KAPAKKGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLL 120

Query: 121 VSVQFEILFCIKFYKNADFLNIFFFFLSYVVSTQNTSLLLLGEGANVTNRMSLKLD 176
           VSVQFEILFCIKFYKNADFLNIFFFFLSYVVSTQNTSLLLLGEGANVTNRMSLKLD
Sbjct: 121 VSVQFEILFCIKFYKNADFLNIFFFFLSYVVSTQNTSLLLLGEGANVTNRMSLKLD 176


>gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 193

 Score =  337 bits (864), Expect = 3e-93
 Identities = 167/169 (98%), Positives = 168/169 (99%)

Query: 8   RRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKG 67
           +RLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKG
Sbjct: 25  KRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKG 84

Query: 68  EKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLLVSVQFEI 127
           EKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLLVSVQFEI
Sbjct: 85  EKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDARGSVCIFDNCVLLVSVQFEI 144

Query: 128 LFCIKFYKNADFLNIFFFFLSYVVSTQNTSLLLLGEGANVTNRMSLKLD 176
           LFCIKFYKNADFLNIFFFFLSY VSTQNTSLLLLGEGANVTNRMSLKLD
Sbjct: 145 LFCIKFYKNADFLNIFFFFLSYAVSTQNTSLLLLGEGANVTNRMSLKLD 193


>gi|5031749 high-mobility group nucleosomal binding domain 2 [Homo
           sapiens]
          Length = 90

 Score =  167 bits (422), Expect = 6e-42
 Identities = 82/90 (91%), Positives = 84/90 (93%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD KGDKAKVKDEPQRRSARLSAKP+ PKPEPKPKKAPAKKGEKV K KKGKA
Sbjct: 1   MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           DAGKEGNNPAENGDAKTDQ QKAEGAGDA+
Sbjct: 61  DAGKEGNNPAENGDAKTDQAQKAEGAGDAK 90


>gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 130

 Score =  163 bits (412), Expect = 8e-41
 Identities = 82/105 (78%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 6   LARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAK 65
           L +RL P AVA T+PK KAEGD KGDKAKVKD+PQRRS RLSAKP+ PKPEPKPK APAK
Sbjct: 26  LPQRLRPTAVAATVPKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPEPKPKNAPAK 85

Query: 66  KGEKVLKEKKG--KADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           KGEKV K KKG  +ADAGKEGNNPAENGDAK D+ QKAEG GDA+
Sbjct: 86  KGEKVPKGKKGARRADAGKEGNNPAENGDAKRDEAQKAEGTGDAK 130


>gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 171

 Score =  163 bits (412), Expect = 8e-41
 Identities = 82/105 (78%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 6   LARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAK 65
           L +RL P AVA T+PK KAEGD KGDKAKVKD+PQRRS RLSAKP+ PKPEPKPK APAK
Sbjct: 67  LPQRLRPTAVAATVPKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPEPKPKNAPAK 126

Query: 66  KGEKVLKEKKG--KADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           KGEKV K KKG  +ADAGKEGNNPAENGDAK D+ QKAEG GDA+
Sbjct: 127 KGEKVPKGKKGARRADAGKEGNNPAENGDAKRDEAQKAEGTGDAK 171


>gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo
           sapiens]
          Length = 171

 Score =  163 bits (412), Expect = 8e-41
 Identities = 82/105 (78%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 6   LARRLHPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAK 65
           L +RL P AVA T+PK KAEGD KGDKAKVKD+PQRRS RLSAKP+ PKPEPKPK APAK
Sbjct: 67  LPQRLRPTAVAATVPKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPEPKPKNAPAK 126

Query: 66  KGEKVLKEKKG--KADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           KGEKV K KKG  +ADAGKEGNNPAENGDAK D+ QKAEG GDA+
Sbjct: 127 KGEKVPKGKKGARRADAGKEGNNPAENGDAKRDEAQKAEGTGDAK 171


>gi|169165461 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score =  161 bits (407), Expect = 3e-40
 Identities = 80/102 (78%), Positives = 87/102 (85%), Gaps = 1/102 (0%)

Query: 8   RRLHPVAVAT-TMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKK 66
           +RL P  +   T+PK KAEGD KGDKAKVKDEPQRRS R SAKP+ PKPEPKPKKAPAKK
Sbjct: 39  QRLCPTTIVNNTVPKRKAEGDAKGDKAKVKDEPQRRSMRFSAKPAPPKPEPKPKKAPAKK 98

Query: 67  GEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           GEK+ K KKGKADAG+EGNNPAENGDAKTDQ QKAEGAG A+
Sbjct: 99  GEKIPKGKKGKADAGEEGNNPAENGDAKTDQAQKAEGAGGAK 140


>gi|169165899 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score =  161 bits (407), Expect = 3e-40
 Identities = 80/102 (78%), Positives = 87/102 (85%), Gaps = 1/102 (0%)

Query: 8   RRLHPVAVAT-TMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKK 66
           +RL P  +   T+PK KAEGD KGDKAKVKDEPQRRS R SAKP+ PKPEPKPKKAPAKK
Sbjct: 39  QRLCPTTIVNNTVPKRKAEGDAKGDKAKVKDEPQRRSMRFSAKPAPPKPEPKPKKAPAKK 98

Query: 67  GEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           GEK+ K KKGKADAG+EGNNPAENGDAKTDQ QKAEGAG A+
Sbjct: 99  GEKIPKGKKGKADAGEEGNNPAENGDAKTDQAQKAEGAGGAK 140


>gi|169165087 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score =  161 bits (407), Expect = 3e-40
 Identities = 80/102 (78%), Positives = 87/102 (85%), Gaps = 1/102 (0%)

Query: 8   RRLHPVAVAT-TMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKK 66
           +RL P  +   T+PK KAEGD KGDKAKVKDEPQRRS R SAKP+ PKPEPKPKKAPAKK
Sbjct: 39  QRLCPTTIVNNTVPKRKAEGDAKGDKAKVKDEPQRRSMRFSAKPAPPKPEPKPKKAPAKK 98

Query: 67  GEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           GEK+ K KKGKADAG+EGNNPAENGDAKTDQ QKAEGAG A+
Sbjct: 99  GEKIPKGKKGKADAGEEGNNPAENGDAKTDQAQKAEGAGGAK 140


>gi|169165669 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score =  153 bits (386), Expect = 8e-38
 Identities = 76/90 (84%), Positives = 79/90 (87%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD K DKAKVKDEPQRRS RLSAKP+ PKPEPKPKKAPAKKGEKV K KKGKA
Sbjct: 1   MPKRKAEGDTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           DAG+EGNNPAENG AKTDQ QKAE  GDA+
Sbjct: 61  DAGEEGNNPAENGVAKTDQAQKAESPGDAK 90


>gi|113415254 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score =  153 bits (386), Expect = 8e-38
 Identities = 76/90 (84%), Positives = 79/90 (87%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD K DKAKVKDEPQRRS RLSAKP+ PKPEPKPKKAPAKKGEKV K KKGKA
Sbjct: 1   MPKRKAEGDTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           DAG+EGNNPAENG AKTDQ QKAE  GDA+
Sbjct: 61  DAGEEGNNPAENGVAKTDQAQKAESPGDAK 90


>gi|113414676 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score =  153 bits (386), Expect = 8e-38
 Identities = 76/90 (84%), Positives = 79/90 (87%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD K DKAKVKDEPQRRS RLSAKP+ PKPEPKPKKAPAKKGEKV K KKGKA
Sbjct: 1   MPKRKAEGDTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           DAG+EGNNPAENG AKTDQ QKAE  GDA+
Sbjct: 61  DAGEEGNNPAENGVAKTDQAQKAESPGDAK 90


>gi|169209024 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score =  149 bits (377), Expect = 9e-37
 Identities = 72/90 (80%), Positives = 77/90 (85%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD KGDKAKV+D+PQRRSARLS KP+ PKPE KPKK PAK GEKVLK + GKA
Sbjct: 1   MPKRKAEGDAKGDKAKVRDKPQRRSARLSTKPAPPKPETKPKKVPAKNGEKVLKGEMGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           D GKEGN PAENGDAKTDQ QK EGAGDA+
Sbjct: 61  DTGKEGNKPAENGDAKTDQTQKGEGAGDAK 90


>gi|113425750 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score =  149 bits (377), Expect = 9e-37
 Identities = 72/90 (80%), Positives = 77/90 (85%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD KGDKAKV+D+PQRRSARLS KP+ PKPE KPKK PAK GEKVLK + GKA
Sbjct: 1   MPKRKAEGDAKGDKAKVRDKPQRRSARLSTKPAPPKPETKPKKVPAKNGEKVLKGEMGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           D GKEGN PAENGDAKTDQ QK EGAGDA+
Sbjct: 61  DTGKEGNKPAENGDAKTDQTQKGEGAGDAK 90


>gi|113425298 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score =  149 bits (377), Expect = 9e-37
 Identities = 72/90 (80%), Positives = 77/90 (85%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD KGDKAKV+D+PQRRSARLS KP+ PKPE KPKK PAK GEKVLK + GKA
Sbjct: 1   MPKRKAEGDAKGDKAKVRDKPQRRSARLSTKPAPPKPETKPKKVPAKNGEKVLKGEMGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           D GKEGN PAENGDAKTDQ QK EGAGDA+
Sbjct: 61  DTGKEGNKPAENGDAKTDQTQKGEGAGDAK 90


>gi|169202834 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score =  147 bits (372), Expect = 4e-36
 Identities = 72/98 (73%), Positives = 79/98 (80%)

Query: 11  HPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKV 70
           HP    T  P+ KA+GD KG KAKVKD+PQRRS RL+AKP+ PKP  KPKK PAK GEKV
Sbjct: 6   HPPQSPTPCPRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKNGEKV 65

Query: 71  LKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           LK KKGKADAGKEGNNPAENG+ KTD  QKAEGAGDA+
Sbjct: 66  LKGKKGKADAGKEGNNPAENGETKTDHAQKAEGAGDAK 103


>gi|89034591 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score =  147 bits (372), Expect = 4e-36
 Identities = 72/98 (73%), Positives = 79/98 (80%)

Query: 11  HPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKV 70
           HP    T  P+ KA+GD KG KAKVKD+PQRRS RL+AKP+ PKP  KPKK PAK GEKV
Sbjct: 6   HPPQSPTPCPRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKNGEKV 65

Query: 71  LKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           LK KKGKADAGKEGNNPAENG+ KTD  QKAEGAGDA+
Sbjct: 66  LKGKKGKADAGKEGNNPAENGETKTDHAQKAEGAGDAK 103


>gi|89033815 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score =  147 bits (372), Expect = 4e-36
 Identities = 72/98 (73%), Positives = 79/98 (80%)

Query: 11  HPVAVATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKV 70
           HP    T  P+ KA+GD KG KAKVKD+PQRRS RL+AKP+ PKP  KPKK PAK GEKV
Sbjct: 6   HPPQSPTPCPRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKNGEKV 65

Query: 71  LKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           LK KKGKADAGKEGNNPAENG+ KTD  QKAEGAGDA+
Sbjct: 66  LKGKKGKADAGKEGNNPAENGETKTDHAQKAEGAGDAK 103


>gi|10835240 high mobility group nucleosomal binding domain 4 [Homo
           sapiens]
          Length = 90

 Score =  146 bits (368), Expect = 1e-35
 Identities = 71/90 (78%), Positives = 79/90 (87%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KA+GD KGDKAKVKDEPQRRSARLSAKP+ PKPEP+PKKA AKKGEK+ K +KGKA
Sbjct: 1   MPKRKAKGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPRPKKASAKKGEKLPKGRKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           DAGK+GNNPA+N DA T Q QKAEG GDA+
Sbjct: 61  DAGKDGNNPAKNRDASTLQSQKAEGTGDAK 90


>gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 197

 Score =  145 bits (367), Expect = 1e-35
 Identities = 77/103 (74%), Positives = 84/103 (81%), Gaps = 2/103 (1%)

Query: 7   ARRLHPVAV-ATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAK 65
           A+ L P AV A T+PK K EGD KGDKAKV D PQRRS RLSAKP+ PKPEPKPKKAPAK
Sbjct: 96  AQHLSPTAVTAATLPKRKTEGDVKGDKAKV-DTPQRRSTRLSAKPAPPKPEPKPKKAPAK 154

Query: 66  KGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           KGEKV K KKGKADAGKEGN PAE GDA TDQ ++AEG G+A+
Sbjct: 155 KGEKVPKGKKGKADAGKEGNYPAEKGDAITDQAREAEGDGEAK 197


>gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo
           sapiens]
          Length = 197

 Score =  145 bits (367), Expect = 1e-35
 Identities = 77/103 (74%), Positives = 84/103 (81%), Gaps = 2/103 (1%)

Query: 7   ARRLHPVAV-ATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAK 65
           A+ L P AV A T+PK K EGD KGDKAKV D PQRRS RLSAKP+ PKPEPKPKKAPAK
Sbjct: 96  AQHLSPTAVTAATLPKRKTEGDVKGDKAKV-DTPQRRSTRLSAKPAPPKPEPKPKKAPAK 154

Query: 66  KGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           KGEKV K KKGKADAGKEGN PAE GDA TDQ ++AEG G+A+
Sbjct: 155 KGEKVPKGKKGKADAGKEGNYPAEKGDAITDQAREAEGDGEAK 197


>gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo
           sapiens]
          Length = 197

 Score =  145 bits (367), Expect = 1e-35
 Identities = 77/103 (74%), Positives = 84/103 (81%), Gaps = 2/103 (1%)

Query: 7   ARRLHPVAV-ATTMPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAK 65
           A+ L P AV A T+PK K EGD KGDKAKV D PQRRS RLSAKP+ PKPEPKPKKAPAK
Sbjct: 96  AQHLSPTAVTAATLPKRKTEGDVKGDKAKV-DTPQRRSTRLSAKPAPPKPEPKPKKAPAK 154

Query: 66  KGEKVLKEKKGKADAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           KGEKV K KKGKADAGKEGN PAE GDA TDQ ++AEG G+A+
Sbjct: 155 KGEKVPKGKKGKADAGKEGNYPAEKGDAITDQAREAEGDGEAK 197


>gi|169163639 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  143 bits (361), Expect = 7e-35
 Identities = 72/90 (80%), Positives = 76/90 (84%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK K EGD KGDKAKVK+EPQRR  RLSAKP+ P PEPKP+KAPAKKGEKV K KKGKA
Sbjct: 1   MPKRKGEGDAKGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKKGEKVPKGKKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
            AGKEGNN AENGDAKTD  QKAE AGDA+
Sbjct: 61  YAGKEGNNLAENGDAKTDGAQKAESAGDAK 90


>gi|88954992 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  143 bits (361), Expect = 7e-35
 Identities = 72/90 (80%), Positives = 76/90 (84%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK K EGD KGDKAKVK+EPQRR  RLSAKP+ P PEPKP+KAPAKKGEKV K KKGKA
Sbjct: 1   MPKRKGEGDAKGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKKGEKVPKGKKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
            AGKEGNN AENGDAKTD  QKAE AGDA+
Sbjct: 61  YAGKEGNNLAENGDAKTDGAQKAESAGDAK 90


>gi|88953166 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  143 bits (361), Expect = 7e-35
 Identities = 72/90 (80%), Positives = 76/90 (84%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK K EGD KGDKAKVK+EPQRR  RLSAKP+ P PEPKP+KAPAKKGEKV K KKGKA
Sbjct: 1   MPKRKGEGDAKGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKKGEKVPKGKKGKA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
            AGKEGNN AENGDAKTD  QKAE AGDA+
Sbjct: 61  YAGKEGNNLAENGDAKTDGAQKAESAGDAK 90


>gi|169208981 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  126 bits (316), Expect = 1e-29
 Identities = 61/90 (67%), Positives = 74/90 (82%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD K DKAK+KD+ Q RS +LS KP+ PKP+ KPKKAP KKGEKV K +KG+A
Sbjct: 1   MPKRKAEGDAKEDKAKIKDKLQGRSTKLSGKPALPKPQLKPKKAPTKKGEKVSKGEKGRA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           ++ KE N PAENGDA+T++ QKAEGAGDA+
Sbjct: 61  NSDKEVNKPAENGDARTEKAQKAEGAGDAK 90


>gi|89039047 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  126 bits (316), Expect = 1e-29
 Identities = 61/90 (67%), Positives = 74/90 (82%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD K DKAK+KD+ Q RS +LS KP+ PKP+ KPKKAP KKGEKV K +KG+A
Sbjct: 1   MPKRKAEGDAKEDKAKIKDKLQGRSTKLSGKPALPKPQLKPKKAPTKKGEKVSKGEKGRA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           ++ KE N PAENGDA+T++ QKAEGAGDA+
Sbjct: 61  NSDKEVNKPAENGDARTEKAQKAEGAGDAK 90


>gi|89038348 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  126 bits (316), Expect = 1e-29
 Identities = 61/90 (67%), Positives = 74/90 (82%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK KAEGD K DKAK+KD+ Q RS +LS KP+ PKP+ KPKKAP KKGEKV K +KG+A
Sbjct: 1   MPKRKAEGDAKEDKAKIKDKLQGRSTKLSGKPALPKPQLKPKKAPTKKGEKVSKGEKGRA 60

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
           ++ KE N PAENGDA+T++ QKAEGAGDA+
Sbjct: 61  NSDKEVNKPAENGDARTEKAQKAEGAGDAK 90


>gi|169168547 PREDICTED: similar to hCG2040192 [Homo sapiens]
          Length = 88

 Score =  121 bits (304), Expect = 3e-28
 Identities = 64/90 (71%), Positives = 70/90 (77%), Gaps = 2/90 (2%)

Query: 19  MPKGKAEGDPKGDKAKVKDEPQRRSARLSAKPSSPKPEPKPKKAPAKKGEKVLKEKKGKA 78
           MPK K EGD KGDKAKVKDEP RRSARLS KPS  K   + KK   ++G +  + KKGKA
Sbjct: 1   MPKTKIEGDAKGDKAKVKDEPLRRSARLSTKPS--KARAQAKKGSREEGREGTQWKKGKA 58

Query: 79  DAGKEGNNPAENGDAKTDQEQKAEGAGDAR 108
            AGKEGNNPAENGDAKTDQ QKAEGAGDA+
Sbjct: 59  VAGKEGNNPAENGDAKTDQAQKAEGAGDAK 88


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,301,221
Number of Sequences: 37866
Number of extensions: 395430
Number of successful extensions: 4576
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 306
Number of HSP's that attempted gapping in prelim test: 3308
Number of HSP's gapped (non-prelim): 1344
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press