Search of human proteins with 169160949

Search of human proteins with 169160949

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169160949 PREDICTED: hypothetical protein [Homo sapiens]
         (163 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169160949 PREDICTED: hypothetical protein [Homo sapiens]           338   2e-93
gi|169162069 PREDICTED: hypothetical protein [Homo sapiens]           335   1e-92
gi|169162780 PREDICTED: hypothetical protein [Homo sapiens]           335   1e-92
gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens]                30   0.92 
gi|29789403 PDZ domain containing 8 [Homo sapiens]                     30   1.2  
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi...    29   2.1  
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi...    29   2.1  
gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens]                28   3.5  
gi|83367077 mucin 16 [Homo sapiens]                                    27   7.8  
gi|89886468 fibronectin type III and SPRY domain containing 1-li...    27   7.8  
gi|223718222 fibronectin type III and SPRY domain containing 1-l...    27   7.8  

>gi|169160949 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 163

 Score =  338 bits (866), Expect = 2e-93
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN 60
           MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN
Sbjct: 1   MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN 60

Query: 61  PRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK 120
           PRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK
Sbjct: 61  PRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK 120

Query: 121 ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV 163
           ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV
Sbjct: 121 ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV 163


>gi|169162069 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 530

 Score =  335 bits (858), Expect = 1e-92
 Identities = 162/163 (99%), Positives = 162/163 (99%)

Query: 1   MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN 60
           MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN
Sbjct: 368 MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN 427

Query: 61  PRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK 120
           PRKPGPED EVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK
Sbjct: 428 PRKPGPEDCEVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK 487

Query: 121 ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV 163
           ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV
Sbjct: 488 ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV 530


>gi|169162780 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 530

 Score =  335 bits (858), Expect = 1e-92
 Identities = 162/163 (99%), Positives = 162/163 (99%)

Query: 1   MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN 60
           MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN
Sbjct: 368 MSLKLSYNLPRNKEIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESN 427

Query: 61  PRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK 120
           PRKPGPED EVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK
Sbjct: 428 PRKPGPEDCEVWWGLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNK 487

Query: 121 ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV 163
           ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV
Sbjct: 488 ANRICTTSASRTLEGLNKISGWCPVSILPGITLKIALTSYVLV 530


>gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens]
          Length = 287

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 14  EIGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESNPRKPGPEDREVWW 73
           E+GAR    RL A+P            SL   A   ELL Q      PR      R V  
Sbjct: 9   EMGARLSRRRLPADP------------SLALDALPPELLVQVLSHVPPRSLVTRCRPVCR 56

Query: 74  GLAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNKANRIC 125
               +  G    W L  AR      S  G+ALY +AQ CL  +   +   +C
Sbjct: 57  AWRDIVDGPTV-WLLQLARDR----SAEGRALYAVAQRCLPSNEDKEEFPLC 103


>gi|29789403 PDZ domain containing 8 [Homo sapiens]
          Length = 1154

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 43  QWFAKANELLFQGREESNPRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISG-P 101
           Q+ AK         E S P K   +DR+ W    +L+  +   W     R+ A+C+    
Sbjct: 650 QFLAKQEVAKDVTSETSCPTKDSSDDRQTWESSEILYRNKLGKW----TRTRASCLFDIE 705

Query: 102 GQALYL-IAQWCLSPHLGNKANRICTTSASRTLE 134
               YL IA WC  P        IC    S  LE
Sbjct: 706 ACHRYLNIALWCRDPF--KLGGLICLGHVSLKLE 737


>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
           sapiens]
          Length = 830

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 22/86 (25%)

Query: 7   YNLPRNKEIGARFYSSRLQAEPN-----TLRG----LTFQINSSLQWFAKANELLFQGRE 57
           ++L R  +I  +F+   +Q +PN     TL G    LT +++ +L  F            
Sbjct: 583 FSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACF------------ 630

Query: 58  ESNPRKPGPEDREVWWGLAVLWTGQE 83
             N  +  P     W+GL +++  QE
Sbjct: 631 -RNAIRVNPRHYNAWYGLGMIYYKQE 655


>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
           sapiens]
          Length = 824

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 22/86 (25%)

Query: 7   YNLPRNKEIGARFYSSRLQAEPN-----TLRG----LTFQINSSLQWFAKANELLFQGRE 57
           ++L R  +I  +F+   +Q +PN     TL G    LT +++ +L  F            
Sbjct: 577 FSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACF------------ 624

Query: 58  ESNPRKPGPEDREVWWGLAVLWTGQE 83
             N  +  P     W+GL +++  QE
Sbjct: 625 -RNAIRVNPRHYNAWYGLGMIYYKQE 649


>gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens]
          Length = 278

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 17/111 (15%)

Query: 15  IGARFYSSRLQAEPNTLRGLTFQINSSLQWFAKANELLFQGREESNPRKPGPEDREVWWG 74
           +GAR    RL A+P            SL   A   ELL Q      PR      R V   
Sbjct: 1   MGARLSRRRLPADP------------SLALDALPPELLVQVLSHVPPRSLVTRCRPVCRA 48

Query: 75  LAVLWTGQEAPWALDTARSSANCISGPGQALYLIAQWCLSPHLGNKANRIC 125
              +  G    W L  AR      S  G+ALY +AQ CL  +   +   +C
Sbjct: 49  WRDIVDGPTV-WLLQLARDR----SAEGRALYAVAQRCLPSNEDKEEFPLC 94


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 60    NPRKPGPEDREVWWGLAVLWTG--QEAPWALDTARSSANCISGPGQALYLIAQWCLSPHL 117
             NP+ PG +  +++W L+ +  G  +  P+ LD      N  +     L     W  +  L
Sbjct: 13088 NPQSPGLDREQLYWQLSQMTNGIKELGPYTLDRNSLYVNGFTHRSSGLTTSTPWTSTVDL 13147

Query: 118   G 118
             G
Sbjct: 13148 G 13148


>gi|89886468 fibronectin type III and SPRY domain containing 1-like
           isoform 1 [Homo sapiens]
          Length = 498

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 46  AKANELLFQGREE-SNPRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISGPGQA 104
           A + +LL+  + + + P  PG     VW G   L TG + P A+ T + S N ++G   +
Sbjct: 435 ANSKQLLYSFKTKFTQPVLPG---FMVWCGGLSLSTGMQVPSAVRTLQKSENGMTGSASS 491

Query: 105 L 105
           L
Sbjct: 492 L 492


>gi|223718222 fibronectin type III and SPRY domain containing 1-like
           isoform 3 [Homo sapiens]
          Length = 530

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 46  AKANELLFQGREE-SNPRKPGPEDREVWWGLAVLWTGQEAPWALDTARSSANCISGPGQA 104
           A + +LL+  + + + P  PG     VW G   L TG + P A+ T + S N ++G   +
Sbjct: 467 ANSKQLLYSFKTKFTQPVLPG---FMVWCGGLSLSTGMQVPSAVRTLQKSENGMTGSASS 523

Query: 105 L 105
           L
Sbjct: 524 L 524


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,372,769
Number of Sequences: 37866
Number of extensions: 272232
Number of successful extensions: 494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 18
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.