Guide to the Human Genome
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Name: LOC100129238 Sequence: fasta or formatted (163aa) NCBI GI: 169160949
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {530aa} PREDICTED: hypothetical protein
alt prot {530aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         14           1
 C cysteine            2.5          4           1
 D aspartate           1.2          2           1
 E glutamate           5.5          9           2
 F phenylalanine       2.5          4           1
 G glycine             7.4         12           1
 H histidine           0.6          1           1
 I isoleucine          5.5          9           1
 K lysine              4.3          7           1
 L leucine            13.5         22           2
 M methionine          0.6          1           1
 N asparagine          6.1         10           1
 P proline             6.1         10           1
 Q glutamine           4.3          7           1
 R arginine            6.1         10           1
 S serine              9.8         16           2
 T threonine           5.5          9           2
 V valine              3.1          5           1
 W tryptophan          4.3          7           2
 Y tyrosine            2.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129238          0.990   PREDICTED: hypothetical protein 
LOC100129238          0.990   PREDICTED: hypothetical protein 
FBXO17                0.016   F-box protein FBG4 isoform 1 
PDZD8                 0.016   PDZ domain containing 8 
CDC27                 0.013   cell division cycle protein 27 isoform 1 
CDC27                 0.013   cell division cycle protein 27 isoform 2 
FBXO17                0.010   F-box protein FBG4 isoform 2 
MUC16                 0.006   mucin 16 
FSD1L                 0.006   fibronectin type III and SPRY domain containing 1-li...
FSD1L                 0.006   fibronectin type III and SPRY domain containing 1-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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