Guide to the Human Genome
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Name: SEPT1 Sequence: fasta or formatted (367aa) NCBI GI: 16604248
Description:

septin 1

Referenced in:

Additional Cell Cycle Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         22           2
 C cysteine            2.2          8           2
 D aspartate           6.8         25           1
 E glutamate           9.5         35           3
 F phenylalanine       3.8         14           1
 G glycine             6.0         22           2
 H histidine           2.2          8           2
 I isoleucine          4.1         15           2
 K lysine              5.7         21           2
 L leucine            10.6         39           2
 M methionine          2.7         10           1
 N asparagine          2.5          9           1
 P proline             4.4         16           1
 Q glutamine           6.5         24           2
 R arginine            8.2         30           2
 S serine              5.7         21           1
 T threonine           3.5         13           1
 V valine              6.8         25           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   septin 1 
SEPT4                 0.646   septin 4 isoform 1 
SEPT4                 0.646   septin 4 isoform 3 
SEPT5                 0.637   septin 5 
SEPT2                 0.527   septin 2 
SEPT2                 0.527   septin 2 
SEPT2                 0.527   septin 2 
SEPT2                 0.527   septin 2 
SEPT7                 0.456   cell division cycle 10 isoform 1 
SEPT7                 0.456   cell division cycle 10 isoform 2 
SEPT3                 0.356   septin 3 isoform A 
SEPT3                 0.356   septin 3 isoform B 
SEPT9                 0.346   septin 9 isoform f 
SEPT9                 0.346   septin 9 isoform d 
SEPT9                 0.346   septin 9 isoform e 
SEPT9                 0.346   septin 9 isoform b 
SEPT9                 0.346   septin 9 isoform e 
SEPT9                 0.346   septin 9 isoform a 
SEPT9                 0.346   septin 9 isoform c 
SEPT12                0.321   septin 12 isoform 2 
SEPT11                0.311   septin 11 
SEPT10                0.307   septin 10 isoform 2 
SEPT10                0.307   septin 10 isoform 1 
SEPT6                 0.307   septin 6 isoform B 
SEPT6                 0.307   septin 6 isoform D 
SEPT6                 0.307   septin 6 isoform A 
SEPT6                 0.307   septin 6 isoform A 
SEPT8                 0.305   septin 8 isoform c 
SEPT8                 0.305   septin 8 isoform a 
SEPT8                 0.305   septin 8 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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