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Search of human proteins with 16554568
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16554568 cyclin D-type binding-protein 1 isoform 2 [Homo
sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16554568 cyclin D-type binding-protein 1 isoform 2 [Homo sapi... 467 e-132
gi|227500367 cyclin D-type binding-protein 1 isoform 1 [Homo sap... 467 e-132
gi|75677345 transmembrane protein 98 [Homo sapiens] 52 4e-07
gi|75677343 transmembrane protein 98 [Homo sapiens] 52 4e-07
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula... 33 0.27
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni... 33 0.27
gi|118498362 kinectin 1 isoform b [Homo sapiens] 30 1.8
gi|118498356 kinectin 1 isoform a [Homo sapiens] 30 1.8
gi|118498368 kinectin 1 isoform c [Homo sapiens] 30 1.8
gi|33620775 kinectin 1 isoform a [Homo sapiens] 30 1.8
gi|4505999 protein phosphatase 1G [Homo sapiens] 29 3.0
gi|29826282 protein phosphatase 1G [Homo sapiens] 29 3.0
gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Homo ... 29 3.0
gi|9945320 cyclin L1 [Homo sapiens] 28 5.1
gi|116517224 coiled-coil domain containing 144B [Homo sapiens] 28 5.1
gi|38201667 inhibitor of growth family, member 1 isoform A [Homo... 28 6.7
gi|38201665 inhibitor of growth family, member 1 isoform B [Homo... 28 6.7
gi|38201663 inhibitor of growth family, member 1 isoform C [Homo... 28 6.7
gi|38201661 inhibitor of growth family, member 1 isoform D [Homo... 28 6.7
gi|109702906 inositol polyphosphate-5-phosphatase A [Homo sapiens] 28 6.7
gi|149363642 coiled-coil domain containing 144A [Homo sapiens] 28 6.7
>gi|16554568 cyclin D-type binding-protein 1 isoform 2 [Homo
sapiens]
Length = 232
Score = 467 bits (1201), Expect = e-132
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH 60
MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH
Sbjct: 1 MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH 60
Query: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV
Sbjct: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
Query: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS 180
RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS
Sbjct: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS 180
Query: 181 AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 232
AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
Sbjct: 181 AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 232
>gi|227500367 cyclin D-type binding-protein 1 isoform 1 [Homo
sapiens]
Length = 360
Score = 467 bits (1201), Expect = e-132
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH 60
MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH
Sbjct: 129 MAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAH 188
Query: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV
Sbjct: 189 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 248
Query: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS 180
RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS
Sbjct: 249 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMCHLTVRINS 308
Query: 181 AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 232
AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
Sbjct: 309 AKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 360
>gi|75677345 transmembrane protein 98 [Homo sapiens]
Length = 226
Score = 52.0 bits (123), Expect = 4e-07
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 72 PYSGLLNDTEENNSDNHNHEDDVL-------GFPSNQDLYWSEDDQELIIPCLALVRASK 124
P L+ E + + DDV+ N+D W ED L+ C+A+++
Sbjct: 45 PIVDLIGAMETQSEPSELELDDVVITNPHIEAILENED--WIEDASGLMSHCIAILKICH 102
Query: 125 ACLKK-IRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPM-CHLTVRINSAK 182
+K + M + K A + DI+ ++ ISP VDD+ S+YPP+ L +A
Sbjct: 103 TLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTAL 162
Query: 183 LVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKE 224
L+SV L A H+T + WI ++A + + ++E
Sbjct: 163 LLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLRE 202
>gi|75677343 transmembrane protein 98 [Homo sapiens]
Length = 226
Score = 52.0 bits (123), Expect = 4e-07
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 72 PYSGLLNDTEENNSDNHNHEDDVL-------GFPSNQDLYWSEDDQELIIPCLALVRASK 124
P L+ E + + DDV+ N+D W ED L+ C+A+++
Sbjct: 45 PIVDLIGAMETQSEPSELELDDVVITNPHIEAILENED--WIEDASGLMSHCIAILKICH 102
Query: 125 ACLKK-IRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPM-CHLTVRINSAK 182
+K + M + K A + DI+ ++ ISP VDD+ S+YPP+ L +A
Sbjct: 103 TLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYPPLDPKLLDARTTAL 162
Query: 183 LVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKE 224
L+SV L A H+T + WI ++A + + ++E
Sbjct: 163 LLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLRE 202
>gi|239757810 PREDICTED: similar to protein phosphatase 1,
regulatory (inhibitor) subunit 3F [Homo sapiens]
Length = 724
Score = 32.7 bits (73), Expect = 0.27
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 93 DVLGFPSNQDLYWSEDDQELIIPCLALVRASKACLKKIRMLVAENGKK-----DQVAQLD 147
D G P Q L E E P A R K+C+K +R AE K D +
Sbjct: 295 DAEGLPQQQQLPQLEPQPECQGPVEAEARQLKSCMKPVRRRPAEEELKTKNMDDNTFAMA 354
Query: 148 DIVDISDEISPSVDDLALSIYPPM 171
+ D+ + + P V L +P M
Sbjct: 355 EHPDVQESVGPLVAPTPLRPWPQM 378
>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
3F [Homo sapiens]
Length = 799
Score = 32.7 bits (73), Expect = 0.27
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 93 DVLGFPSNQDLYWSEDDQELIIPCLALVRASKACLKKIRMLVAENGKK-----DQVAQLD 147
D G P Q L E E P A R K+C+K +R AE K D +
Sbjct: 295 DAEGLPQQQQLPQLEPQPECQGPVEAEARQLKSCMKPVRRRPAEEELKTKNMDDNTFAMA 354
Query: 148 DIVDISDEISPSVDDLALSIYPPM 171
+ D+ + + P V L +P M
Sbjct: 355 EHPDVQESVGPLVAPTPLRPWPQM 378
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 163
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 163
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 163
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 61 EEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALV 120
E+M+Q+V D LL + ++ N E +L +DQ
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKIL------------NDQN--------- 707
Query: 121 RASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDL 163
+A K+ ++K++ LV+E KD V Q++ + DE +V++L
Sbjct: 708 KALKSEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEEL 750
>gi|4505999 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 36 QIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVL 95
++PR K+ D ++ E+ E+ EE D YS + EE+ D E+D
Sbjct: 247 KLPRVAKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEEAEEDD- 305
Query: 96 GFPSNQDLYWSEDDQELIIP 115
E+++E+++P
Sbjct: 306 ----------EEEEEEMMVP 315
>gi|29826282 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 36 QIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVL 95
++PR K+ D ++ E+ E+ EE D YS + EE+ D E+D
Sbjct: 247 KLPRVAKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEEAEEDD- 305
Query: 96 GFPSNQDLYWSEDDQELIIP 115
E+++E+++P
Sbjct: 306 ----------EEEEEEMMVP 315
>gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Homo
sapiens]
Length = 463
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 190 ALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 232
+L + K ++ P P WI +L I +N I +T L+L
Sbjct: 152 SLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDL 194
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 28.5 bits (62), Expect = 5.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 35 PQIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNS 85
P PR+ KA ++ NV VK E+ +QA + PY+G+ D++ + +
Sbjct: 340 PSSPREVKAEEKSPISINVKTVKKEPEDRQQASK--SPYNGVRKDSKRSRN 388
>gi|116517224 coiled-coil domain containing 144B [Homo sapiens]
Length = 725
Score = 28.5 bits (62), Expect = 5.1
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 5 MEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEME 64
+E LS P S +++ + + Q+ + L + +NV K+ EEME
Sbjct: 473 LENLSSLPPDSDRTSEVYLHEELQQDMQKFKNEVNTLEEEFLALKKENVQLHKEVEEEME 532
Query: 65 QAVEECDPYSGLLND--TEENNSDNHNHE 91
+ SG L D T N+ D N +
Sbjct: 533 KHRSNSTELSGTLTDGTTVGNDDDGLNQQ 561
>gi|38201667 inhibitor of growth family, member 1 isoform A [Homo
sapiens]
Length = 279
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 78 NDTEENNSDNHNHEDDVLGFPSNQ 101
N+ EN S NH+H+D G P +
Sbjct: 156 NENRENASSNHDHDDGASGTPKEK 179
>gi|38201665 inhibitor of growth family, member 1 isoform B [Homo
sapiens]
Length = 210
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 78 NDTEENNSDNHNHEDDVLGFPSNQ 101
N+ EN S NH+H+D G P +
Sbjct: 87 NENRENASSNHDHDDGASGTPKEK 110
>gi|38201663 inhibitor of growth family, member 1 isoform C [Homo
sapiens]
Length = 235
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 78 NDTEENNSDNHNHEDDVLGFPSNQ 101
N+ EN S NH+H+D G P +
Sbjct: 112 NENRENASSNHDHDDGASGTPKEK 135
>gi|38201661 inhibitor of growth family, member 1 isoform D [Homo
sapiens]
Length = 422
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 78 NDTEENNSDNHNHEDDVLGFPSNQ 101
N+ EN S NH+H+D G P +
Sbjct: 299 NENRENASSNHDHDDGASGTPKEK 322
>gi|109702906 inositol polyphosphate-5-phosphatase A [Homo sapiens]
Length = 412
Score = 28.1 bits (61), Expect = 6.7
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 36 QIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEE-NNSDNHNHEDDV 94
++ RDN ALL K + KD E++ + PYS E+ N+ D +
Sbjct: 292 EVFRDNNGTALLEFDKELSVFKDRLYELDISFPPSYPYSEDARQGEQYMNTRCPAWCDRI 351
Query: 95 LGFPSNQDLYWSEDDQELII 114
L PS ++L + +E ++
Sbjct: 352 LMSPSAKELVLRSESEEKVV 371
>gi|149363642 coiled-coil domain containing 144A [Homo sapiens]
Length = 1427
Score = 28.1 bits (61), Expect = 6.7
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 5 MEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEME 64
+E LS P S +++ + + Q+ + L + ++V KD EEME
Sbjct: 473 LENLSSLPPDSDRTSEVYLHEELQQDMQKFKNEVNTLEEEFLALKKEDVQLHKDVEEEME 532
Query: 65 QAVEECDPYSGLLND--TEENNSDNHNHE 91
+ SG L D T N+ D N +
Sbjct: 533 KHRSNSTELSGTLTDGTTVGNDDDGLNQQ 561
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,817,359
Number of Sequences: 37866
Number of extensions: 357352
Number of successful extensions: 875
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 22
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.