Search of human proteins with 164663775

Search of human proteins with 164663775

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|164663775 mitochondrial methionyl-tRNA formyltransferase
precursor [Homo sapiens]
         (389 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|164663775 mitochondrial methionyl-tRNA formyltransferase prec...   795   0.0  
gi|21614513 aldehyde dehydrogenase 1 family, member L1 [Homo sap...    60   4e-09
gi|238814322 aldehyde dehydrogenase 1 family, member L2 [Homo sa...    53   4e-07
gi|4503915 phosphoribosylglycinamide formyltransferase, phosphor...    49   1e-05
gi|209869995 phosphoribosylglycinamide formyltransferase, phosph...    49   1e-05
gi|209869993 phosphoribosylglycinamide formyltransferase, phosph...    49   1e-05
gi|9910362 semaphorin sem2 [Homo sapiens]                              31   2.2  
gi|33286414 Hermansky-Pudlak syndrome 1 protein isoform c [Homo ...    30   3.7  
gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo ...    30   3.7  
gi|17136148 ATPase, H+ transporting, lysosomal accessory protein...    30   3.7  
gi|116805342 human immunodeficiency virus type I enhancer bindin...    30   3.7  
gi|148806881 hypothetical protein LOC57608 [Homo sapiens]              30   4.9  

>gi|164663775 mitochondrial methionyl-tRNA formyltransferase
           precursor [Homo sapiens]
          Length = 389

 Score =  795 bits (2052), Expect = 0.0
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MRVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAR 60
           MRVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAR
Sbjct: 1   MRVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAR 60

Query: 61  EALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDV 120
           EALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDV
Sbjct: 61  EALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDV 120

Query: 121 GVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPK 180
           GVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPK
Sbjct: 121 GVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPK 180

Query: 181 RFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATY 240
           RFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATY
Sbjct: 181 RFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATY 240

Query: 241 APKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPK 300
           APKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPK
Sbjct: 241 APKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPK 300

Query: 301 LTGQALIPGSVIYHKQSQILLVYCKDGWIGVRSVMLKKSLTATDFYNGYLHPWYQKNSQA 360
           LTGQALIPGSVIYHKQSQILLVYCKDGWIGVRSVMLKKSLTATDFYNGYLHPWYQKNSQA
Sbjct: 301 LTGQALIPGSVIYHKQSQILLVYCKDGWIGVRSVMLKKSLTATDFYNGYLHPWYQKNSQA 360

Query: 361 QPSQCRFQTLRLPTKKKQKKTVAMQQCIE 389
           QPSQCRFQTLRLPTKKKQKKTVAMQQCIE
Sbjct: 361 QPSQCRFQTLRLPTKKKQKKTVAMQQCIE 389


>gi|21614513 aldehyde dehydrogenase 1 family, member L1 [Homo
           sapiens]
          Length = 902

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 81/325 (24%), Positives = 133/325 (40%), Gaps = 43/325 (13%)

Query: 49  RVLFFGTDQFAREALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVY 108
           ++   G   F +E     H  +E  E      + V T+P    K  P+   A +  +PV+
Sbjct: 2   KIAVIGQSLFGQEVY--CHLRKEGHEV-----VGVFTVPDKDGKADPLGLEAEKDGVPVF 54

Query: 109 E---WPDVGSGEYDVGVVASFGRLLNEALILKF-------------PYGILNVHPSCLPR 152
           +   W   G    DV  VA +  L  E  +L F              +G +  HPS LPR
Sbjct: 55  KYSRWRAKGQALPDV--VAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPR 112

Query: 153 WRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKEL-EAVLSRL 211
            RG + +  T++HGD   G +I        D G +L Q+   V P  T   L    L   
Sbjct: 113 HRGASAINWTLIHGDKKGGFSIFW-ADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPE 171

Query: 212 GANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTSCIKWEEQTSEQIFRLYRAIGNI 271
           G   ++  ++ + E  +    QP EGATY       T+ I W +Q +E I    R    +
Sbjct: 172 GIKGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINW-DQPAEAIHNWIRGNDKV 230

Query: 272 IPLQTLWMANTIKLLDLVEVNSSVLADPKLTGQAL-IPGSVIYHK-----QSQILLVYCK 325
               T      +   +     S ++ +    G AL IPG+   H+     ++ ++L    
Sbjct: 231 PGAWTEACEQKLTFFNSTLNTSGLVPE----GDALPIPGA---HRPGVVTKAGLILFGND 283

Query: 326 DGWIGVRSVMLK--KSLTATDFYNG 348
           D  + V+++ L+  K + A++F+ G
Sbjct: 284 DKMLLVKNIQLEDGKMILASNFFKG 308


>gi|238814322 aldehyde dehydrogenase 1 family, member L2 [Homo
           sapiens]
          Length = 923

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 16/188 (8%)

Query: 83  VVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDVGVVASFGRLLNEAL-ILKF--- 138
           V T+P    K  P+   A +   PV++ P        +  VA   R +   L +L F   
Sbjct: 51  VFTVPDKDGKADPLALAAEKDGTPVFKLPKWRVKGKTIKEVAEAYRSVGAELNVLPFCTQ 110

Query: 139 ----------PYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPIL 188
                      +G +  HPS LPR RG + +  T++ GD   G ++        D GPIL
Sbjct: 111 FIPMDIIDSPKHGSIIYHPSILPRHRGASAINWTLIMGDKKAGFSVFW-ADDGLDTGPIL 169

Query: 189 KQETVPVPPKSTAKEL-EAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAG 247
            Q +  V P  T   L    L   G   ++  ++ + +  +    QP EGATY       
Sbjct: 170 LQRSCDVEPNDTVDALYNRFLFPEGIKAMVEAVQLIADGKAPRIPQPEEGATYEGIQKKE 229

Query: 248 TSCIKWEE 255
            + I W++
Sbjct: 230 NAEISWDQ 237


>gi|4503915 phosphoribosylglycinamide formyltransferase,
           phosphoribosylglycinamide synthetase,
           phosphoribosylaminoimidazole synthetase isoform 1 [Homo
           sapiens]
          Length = 1010

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 119 DVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIR 178
           D+  +A F R+L+   + K+   +LN+HPS LP ++G       +  G TVTG T+  + 
Sbjct: 888 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFV- 946

Query: 179 PKRFDVGPILKQETVPVPPKSTAKEL 204
            +  D G I+ QE VPV    T   L
Sbjct: 947 AEDVDAGQIILQEAVPVKRGDTVATL 972


>gi|209869995 phosphoribosylglycinamide formyltransferase,
           phosphoribosylglycinamide synthetase,
           phosphoribosylaminoimidazole synthetase isoform 1 [Homo
           sapiens]
          Length = 1010

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 119 DVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIR 178
           D+  +A F R+L+   + K+   +LN+HPS LP ++G       +  G TVTG T+  + 
Sbjct: 888 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFV- 946

Query: 179 PKRFDVGPILKQETVPVPPKSTAKEL 204
            +  D G I+ QE VPV    T   L
Sbjct: 947 AEDVDAGQIILQEAVPVKRGDTVATL 972


>gi|209869993 phosphoribosylglycinamide formyltransferase,
           phosphoribosylglycinamide synthetase,
           phosphoribosylaminoimidazole synthetase isoform 1 [Homo
           sapiens]
          Length = 1010

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 119 DVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIR 178
           D+  +A F R+L+   + K+   +LN+HPS LP ++G       +  G TVTG T+  + 
Sbjct: 888 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFV- 946

Query: 179 PKRFDVGPILKQETVPVPPKSTAKEL 204
            +  D G I+ QE VPV    T   L
Sbjct: 947 AEDVDAGQIILQEAVPVKRGDTVATL 972


>gi|9910362 semaphorin sem2 [Homo sapiens]
          Length = 782

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 18  RRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAREALRALHAARENKEEEL 77
           R GRP      LA+   +   D    E   + V+F GTD  +   + AL A    + EE+
Sbjct: 421 RHGRPVLVKTHLAQQLHQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQAGGSAEPEEV 480

Query: 78  I-DKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDVGVVASFGRLLNEALIL 136
           + ++L+V  +P+P    +   + +V+ Q+ +Y    +G  +  +    ++G    E  + 
Sbjct: 481 VLEELQVFKVPTP----ITEMEISVKRQM-LYVGSRLGVAQLRLHQCETYGTACAECCLA 535

Query: 137 KFPY 140
           + PY
Sbjct: 536 RDPY 539


>gi|33286414 Hermansky-Pudlak syndrome 1 protein isoform c [Homo
          sapiens]
          Length = 324

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 50 VLFFGTDQFAREALRALHAARENKEEEL 77
          VLF+ TDQ   E+LR      EN+EEEL
Sbjct: 13 VLFYWTDQEFEESLRLKFGQSENEEEEL 40


>gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo
          sapiens]
          Length = 700

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 50 VLFFGTDQFAREALRALHAARENKEEEL 77
          VLF+ TDQ   E+LR      EN+EEEL
Sbjct: 13 VLFYWTDQEFEESLRLKFGQSENEEEEL 40


>gi|17136148 ATPase, H+ transporting, lysosomal accessory protein 1
           precursor [Homo sapiens]
          Length = 470

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 44  EKPPWRVLFFGTDQFAREALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQS 103
           E  P  VL F  D+ + E   A      NK++     LE     +PS   LP   +   S
Sbjct: 83  ELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAVS 142

Query: 104 QLPVYEWPDVGSGEYDVGVVASFGRLLNEA----LILKFPY 140
            L  Y    +G+    V +       LN +    L+++ PY
Sbjct: 143 TLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIRLPY 183


>gi|116805342 human immunodeficiency virus type I enhancer binding
            protein 1 [Homo sapiens]
          Length = 2718

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 130  LNEALILKFPYGI--LNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPI 187
            LN+A  L  P G+  LNV P C    R  A    +     T T + +  +R K FD G I
Sbjct: 1339 LNKAEFLMIPAGLNTLNV-PGCHREMRRTA----SEQINCTQTSMEVSDLRSKSFDCGSI 1393

Query: 188  LKQETVPV----PPKSTAK 202
               +T P+    PP S ++
Sbjct: 1394 TPPQTTPLTELQPPSSPSR 1412


>gi|148806881 hypothetical protein LOC57608 [Homo sapiens]
          Length = 1359

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 6   RRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSR 41
           R  WG P   G   G P+ + R +AR  W D R S+
Sbjct: 498 RWLWGQPPGDGENSGLPNQRDRCVARGQWPDVRGSQ 533


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,746,496
Number of Sequences: 37866
Number of extensions: 712252
Number of successful extensions: 1793
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 17
length of query: 389
length of database: 18,247,518
effective HSP length: 104
effective length of query: 285
effective length of database: 14,309,454
effective search space: 4078194390
effective search space used: 4078194390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.