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Search of human proteins with 163659901
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|163659901 insulin-like growth factor 1 isoform 2
preproprotein [Homo sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|163659901 insulin-like growth factor 1 isoform 2 preproprotei... 285 1e-77
gi|11024682 insulin-like growth factor 1 isoform 4 preproprotein... 275 1e-74
gi|163659903 insulin-like growth factor 1 isoform 3 preproprotei... 236 3e-63
gi|163659899 insulin-like growth factor 1 isoform 1 preproprotei... 236 3e-63
gi|4504609 insulin-like growth factor 2 isoform 1 precursor [Hom... 94 5e-20
gi|108796063 insulin-like growth factor 2 isoform 1 precursor [H... 94 5e-20
gi|189083846 insulin-like growth factor 2 isoform 2 [Homo sapiens] 94 5e-20
gi|4557671 proinsulin precursor [Homo sapiens] 49 1e-06
gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens] 37 0.005
gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens] 29 1.1
gi|5902052 relaxin 1 preproprotein [Homo sapiens] 29 1.4
gi|53729363 leucine rich repeat and sterile alpha motif containi... 28 2.4
gi|53729361 leucine rich repeat and sterile alpha motif containi... 28 2.4
gi|53729359 leucine rich repeat and sterile alpha motif containi... 28 2.4
>gi|163659901 insulin-like growth factor 1 isoform 2 preproprotein
[Homo sapiens]
Length = 137
Score = 285 bits (728), Expect = 1e-77
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MITPTVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKP 60
MITPTVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKP
Sbjct: 1 MITPTVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKP 60
Query: 61 TGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQKEV 120
TGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQKEV
Sbjct: 61 TGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQKEV 120
Query: 121 HLKNASRGSAGNKNYRM 137
HLKNASRGSAGNKNYRM
Sbjct: 121 HLKNASRGSAGNKNYRM 137
>gi|11024682 insulin-like growth factor 1 isoform 4 preproprotein
[Homo sapiens]
Length = 153
Score = 275 bits (702), Expect = 1e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 6 VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS 65
VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS
Sbjct: 22 VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS 81
Query: 66 SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQKEVHLKNA 125
SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQKEVHLKNA
Sbjct: 82 SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQKEVHLKNA 141
Query: 126 SRGSAGNKNYRM 137
SRGSAGNKNYRM
Sbjct: 142 SRGSAGNKNYRM 153
>gi|163659903 insulin-like growth factor 1 isoform 3 preproprotein
[Homo sapiens]
Length = 195
Score = 236 bits (603), Expect = 3e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 6 VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS 65
VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS
Sbjct: 22 VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS 81
Query: 66 SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQK 118
SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQK
Sbjct: 82 SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQK 134
>gi|163659899 insulin-like growth factor 1 isoform 1 preproprotein
[Homo sapiens]
Length = 158
Score = 236 bits (603), Expect = 3e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 6 VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS 65
VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS
Sbjct: 22 VKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVDALQFVCGDRGFYFNKPTGYGS 81
Query: 66 SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQK 118
SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQK
Sbjct: 82 SSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQK 134
>gi|4504609 insulin-like growth factor 2 isoform 1 precursor [Homo
sapiens]
Length = 180
Score = 93.6 bits (231), Expect = 5e-20
Identities = 53/91 (58%), Positives = 58/91 (63%), Gaps = 12/91 (13%)
Query: 21 LCLLTFTSSATA------GPETLCGAELVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTG 74
L LLTF + A+ ETLCG ELVD LQFVCGDRGFYF++P S R G
Sbjct: 10 LVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSRPASRVSRRSR----G 65
Query: 75 IVDECCFRSCDLRRLEMYCAPLKPAKSARSV 105
IV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 66 IVEECCFRSCDLALLETYCA--TPAKSERDV 94
>gi|108796063 insulin-like growth factor 2 isoform 1 precursor [Homo
sapiens]
Length = 180
Score = 93.6 bits (231), Expect = 5e-20
Identities = 53/91 (58%), Positives = 58/91 (63%), Gaps = 12/91 (13%)
Query: 21 LCLLTFTSSATA------GPETLCGAELVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTG 74
L LLTF + A+ ETLCG ELVD LQFVCGDRGFYF++P S R G
Sbjct: 10 LVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSRPASRVSRRSR----G 65
Query: 75 IVDECCFRSCDLRRLEMYCAPLKPAKSARSV 105
IV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 66 IVEECCFRSCDLALLETYCA--TPAKSERDV 94
>gi|189083846 insulin-like growth factor 2 isoform 2 [Homo sapiens]
Length = 236
Score = 93.6 bits (231), Expect = 5e-20
Identities = 53/91 (58%), Positives = 58/91 (63%), Gaps = 12/91 (13%)
Query: 21 LCLLTFTSSATA------GPETLCGAELVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTG 74
L LLTF + A+ ETLCG ELVD LQFVCGDRGFYF++P S R G
Sbjct: 66 LVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSRPASRVSRRSR----G 121
Query: 75 IVDECCFRSCDLRRLEMYCAPLKPAKSARSV 105
IV+ECCFRSCDL LE YCA PAKS R V
Sbjct: 122 IVEECCFRSCDLALLETYCA--TPAKSERDV 150
>gi|4557671 proinsulin precursor [Homo sapiens]
Length = 110
Score = 49.3 bits (116), Expect = 1e-06
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 23/80 (28%)
Query: 37 LCGAELVDALQFVCGDRGFYFNKPT----------------GYGSSSRR-------APQT 73
LCG+ LV+AL VCG+RGF++ T G G+ S + +
Sbjct: 30 LCGSHLVEALYLVCGERGFFYTPKTRREAEDLQVGQVELGGGPGAGSLQPLALEGSLQKR 89
Query: 74 GIVDECCFRSCDLRRLEMYC 93
GIV++CC C L +LE YC
Sbjct: 90 GIVEQCCTSICSLYQLENYC 109
>gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens]
Length = 200
Score = 37.0 bits (84), Expect = 0.005
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 37 LCGAELVDALQFVCGDRGFYFNKPT 61
LCG+ LV+AL VCG+RGF++ T
Sbjct: 30 LCGSHLVEALYLVCGERGFFYTPKT 54
>gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens]
Length = 504
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 79 CCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQKEVH 121
CC R+C RR +PL+ + SV + D P + VH
Sbjct: 409 CCRRACRCRRWPQTPSPLQELSAQSSVLSTTPPDAPSRKASVH 451
>gi|5902052 relaxin 1 preproprotein [Homo sapiens]
Length = 185
Score = 28.9 bits (63), Expect = 1.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 65 SSSRRAPQTGIVDECCFRSCDLRRLEMYC 93
S +R P + ++CC C R L YC
Sbjct: 157 SQKKRRPYVALFEKCCLIGCTKRSLAKYC 185
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 34 PETLCGAELVDALQFVCGDRGFYFNKPTGY 63
P +CGA LQF+C + G + P+ Y
Sbjct: 189 PREVCGAGTAAILQFLCKESGLEYYPPSQY 218
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 34 PETLCGAELVDALQFVCGDRGFYFNKPTGY 63
P +CGA LQF+C + G + P+ Y
Sbjct: 189 PREVCGAGTAAILQFLCKESGLEYYPPSQY 218
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 34 PETLCGAELVDALQFVCGDRGFYFNKPTGY 63
P +CGA LQF+C + G + P+ Y
Sbjct: 189 PREVCGAGTAAILQFLCKESGLEYYPPSQY 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,404,469
Number of Sequences: 37866
Number of extensions: 221571
Number of successful extensions: 449
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 15
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.