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Search of human proteins with 157785656
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157785656 nudix motif 7 [Homo sapiens]
(238 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157785656 nudix motif 7 [Homo sapiens] 484 e-137
gi|32469515 nudix-type motif 8 [Homo sapiens] 62 4e-10
gi|10567816 guanine nucleotide binding protein, alpha activating... 31 0.82
gi|22219467 nudix-type motif 2 [Homo sapiens] 31 1.1
gi|22219465 nudix-type motif 2 [Homo sapiens] 31 1.1
gi|4502125 nudix-type motif 2 [Homo sapiens] 31 1.1
gi|55953063 SET domain containing 4 isoform c [Homo sapiens] 29 3.1
gi|8393013 SET domain containing 4 isoform a [Homo sapiens] 29 3.1
gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens] 29 4.1
gi|41393559 kinesin family member 1B isoform alpha [Homo sapiens] 29 4.1
gi|218083730 zinc finger protein 237 isoform 3 [Homo sapiens] 29 4.1
gi|89001102 zinc finger protein 237 isoform 2 [Homo sapiens] 29 4.1
gi|89001100 zinc finger protein 237 isoform 1 [Homo sapiens] 29 4.1
gi|63055049 phosphoglucomutase 2 [Homo sapiens] 28 5.3
gi|4504051 guanine nucleotide binding protein, alpha z polypepti... 28 5.3
>gi|157785656 nudix motif 7 [Homo sapiens]
Length = 238
Score = 484 bits (1245), Expect = e-137
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MSRLGLPEEPVRNSLLDDAKARLRKYDIGGKYSHLPYNKYSVLLPLVAKEGKLHLLFTVR 60
MSRLGLPEEPVRNSLLDDAKARLRKYDIGGKYSHLPYNKYSVLLPLVAKEGKLHLLFTVR
Sbjct: 1 MSRLGLPEEPVRNSLLDDAKARLRKYDIGGKYSHLPYNKYSVLLPLVAKEGKLHLLFTVR 60
Query: 61 SEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTL 120
SEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTL
Sbjct: 61 SEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTL 120
Query: 121 ITPFVGLIDHNFQAQPNPAEVKDVFLVPLAYFLHPQVHDQHYVTRLGHRFINHIFEYTNP 180
ITPFVGLIDHNFQAQPNPAEVKDVFLVPLAYFLHPQVHDQHYVTRLGHRFINHIFEYTNP
Sbjct: 121 ITPFVGLIDHNFQAQPNPAEVKDVFLVPLAYFLHPQVHDQHYVTRLGHRFINHIFEYTNP 180
Query: 181 EDGVTYQIKGMTANLAVLVAFIILEKKPTFEVQFNLNDVLASSEELFLKVHKKATSRL 238
EDGVTYQIKGMTANLAVLVAFIILEKKPTFEVQFNLNDVLASSEELFLKVHKKATSRL
Sbjct: 181 EDGVTYQIKGMTANLAVLVAFIILEKKPTFEVQFNLNDVLASSEELFLKVHKKATSRL 238
>gi|32469515 nudix-type motif 8 [Homo sapiens]
Length = 140
Score = 62.0 bits (149), Expect = 4e-10
Identities = 43/105 (40%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 41 SVLLPLVAKEGKLHLLFTVRSEKLR-RAPGEVCFPGGKRDPTDMDDAATALREAQEEVGL 99
+VL+PL + G LL+T+RS +L R G+V FPGGK DP D D TALRE +EE+GL
Sbjct: 33 AVLVPLCSVRGVPALLYTLRSSRLTGRHKGDVSFPGGKCDPADQDVVHTALRETREELGL 92
Query: 100 RPHQVEVVCCLVPCLIDTDTLITPF---VGLIDHNFQAQPNPAEV 141
+ V L P + P VG +D +PN EV
Sbjct: 93 AVPEEHVWGLLRPVYDPQKATVVPVLAGVGPLDPQ-SLRPNSEEV 136
>gi|10567816 guanine nucleotide binding protein, alpha activating
polypeptide O isoform a [Homo sapiens]
Length = 354
Score = 31.2 bits (69), Expect = 0.82
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 62 EKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTLI 121
EK++++P +CFP P +DAA ++ E P+ + + C + C DT+ +
Sbjct: 277 EKIKKSPLTICFP-EYTGPNTYEDAAAYIQAQFESKNRSPN--KEIYCHMTCATDTNNIQ 333
Query: 122 TPFVGLID 129
F + D
Sbjct: 334 VVFDAVTD 341
>gi|22219467 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 74 PGGKRDPTDMDDAATALREAQEEVGLRPHQVEVV 107
P G +P + DD TALRE QEE G+ Q+ ++
Sbjct: 41 PKGHVEPGE-DDLETALRETQEEAGIEAGQLTII 73
>gi|22219465 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 74 PGGKRDPTDMDDAATALREAQEEVGLRPHQVEVV 107
P G +P + DD TALRE QEE G+ Q+ ++
Sbjct: 41 PKGHVEPGE-DDLETALRETQEEAGIEAGQLTII 73
>gi|4502125 nudix-type motif 2 [Homo sapiens]
Length = 147
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 74 PGGKRDPTDMDDAATALREAQEEVGLRPHQVEVV 107
P G +P + DD TALRE QEE G+ Q+ ++
Sbjct: 41 PKGHVEPGE-DDLETALRETQEEAGIEAGQLTII 73
>gi|55953063 SET domain containing 4 isoform c [Homo sapiens]
Length = 307
Score = 29.3 bits (64), Expect = 3.1
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 72 CFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTLITPFVGLIDHN 131
CFPG R T+L+E Q + L CL+ TDT+I ++G
Sbjct: 54 CFPGTGRGLMSQ----TSLQEGQMIISLPES----------CLLTTDTVIRSYLGAYITK 99
Query: 132 FQAQPNPAEVKDVFLVPLAYFLHPQVHDQH 161
++ P+P L+ L FL + H H
Sbjct: 100 WKPPPSP-------LLALCTFLVSEKHAGH 122
>gi|8393013 SET domain containing 4 isoform a [Homo sapiens]
Length = 440
Score = 29.3 bits (64), Expect = 3.1
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 72 CFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTLITPFVGLIDHN 131
CFPG R T+L+E Q + L CL+ TDT+I ++G
Sbjct: 54 CFPGTGRGLMSQ----TSLQEGQMIISLPES----------CLLTTDTVIRSYLGAYITK 99
Query: 132 FQAQPNPAEVKDVFLVPLAYFLHPQVHDQH 161
++ P+P L+ L FL + H H
Sbjct: 100 WKPPPSP-------LLALCTFLVSEKHAGH 122
>gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens]
Length = 655
Score = 28.9 bits (63), Expect = 4.1
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 140 EVKDVFLVPLAYFLHPQVHDQHYVTRLGHRFINHIFEYTNPEDGVTYQIKGMTANLAVLV 199
EV F L + +V D+ T+L + ++ FEY + GV Y +G + +
Sbjct: 348 EVSAFFPANLDFLCLQEVFDKRAATKLKEQ-LHGYFEYILYDVGV-YGCQGCCSFKCLNS 405
Query: 200 AFIILEKKPTFEVQFNL------NDVLASSEELFLKVHKKAT 235
+ + P +V ++ +D LAS LFLKV +T
Sbjct: 406 GLLFASRYPIMDVAYHCYPNKCNDDALASKGALFLKVQVGST 447
>gi|41393559 kinesin family member 1B isoform alpha [Homo sapiens]
Length = 1153
Score = 28.9 bits (63), Expect = 4.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 70 EVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTL 120
E+C GK+DP + D R+ + VG+ ++E V D D L
Sbjct: 769 ELCAMYGKKDPNERDSWRAVARDVWDTVGVGDEKIEDVMATGKGSTDVDDL 819
>gi|218083730 zinc finger protein 237 isoform 3 [Homo sapiens]
Length = 669
Score = 28.9 bits (63), Expect = 4.1
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 14 SLLDDAKARLRKYDIGGKYSHLPYNKYSVLLP----LVAKEGKLHLLFTVRSEKLRRAPG 69
S+ A A R + + P YSV+ P L +++G + + E+ G
Sbjct: 70 SISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIETNG 129
Query: 70 EV-----CF-----PGGKRDPTDMDDAATALREAQEEVGLRP 101
CF PG K D+D + ++L ++ + G+RP
Sbjct: 130 GAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRP 171
>gi|89001102 zinc finger protein 237 isoform 2 [Homo sapiens]
Length = 208
Score = 28.9 bits (63), Expect = 4.1
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 14 SLLDDAKARLRKYDIGGKYSHLPYNKYSVLLP----LVAKEGKLHLLFTVRSEKLRRAPG 69
S+ A A R + + P YSV+ P L +++G + + E+ G
Sbjct: 70 SISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIETNG 129
Query: 70 EV-----CF-----PGGKRDPTDMDDAATALREAQEEVGLRP 101
CF PG K D+D + ++L ++ + G+RP
Sbjct: 130 GAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRP 171
>gi|89001100 zinc finger protein 237 isoform 1 [Homo sapiens]
Length = 382
Score = 28.9 bits (63), Expect = 4.1
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 14 SLLDDAKARLRKYDIGGKYSHLPYNKYSVLLP----LVAKEGKLHLLFTVRSEKLRRAPG 69
S+ A A R + + P YSV+ P L +++G + + E+ G
Sbjct: 70 SISAPAIADQRNFIFASSKNEKPQGNYSVIPPSSRDLASQKGNISETIVIDDEEDIETNG 129
Query: 70 EV-----CF-----PGGKRDPTDMDDAATALREAQEEVGLRP 101
CF PG K D+D + ++L ++ + G+RP
Sbjct: 130 GAEKKSSCFIEWGLPGTKNKTNDLDFSTSSLSRSKTKTGVRP 171
>gi|63055049 phosphoglucomutase 2 [Homo sapiens]
Length = 612
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 31 KYSHLPYNKYSVLLPLVAKEGKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATAL 90
K + LP +K S ++ G + + T +E + E+C P G DP + L
Sbjct: 532 KKAVLPTSKSSQMITFTFANGGVATMRTSGTEPKIKYYAELCAPPGNSDPEQLKKELNEL 591
Query: 91 REAQEEVGLRPHQ 103
A EE +P +
Sbjct: 592 VSAIEEHFFQPQK 604
>gi|4504051 guanine nucleotide binding protein, alpha z polypeptide
[Homo sapiens]
Length = 355
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 61 SEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTL 120
+EK+RR P +CFP K T ++AA ++ E++ R + + + C DT +
Sbjct: 276 AEKIRRIPLTICFPEYKGQNT-YEEAAVYIQRQFEDLN-RNKETKEIYSHFTCATDTSNI 333
Query: 121 ITPFVGLID 129
F + D
Sbjct: 334 QFVFDAVTD 342
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,374,680
Number of Sequences: 37866
Number of extensions: 425151
Number of successful extensions: 707
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 15
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.