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Search of human proteins with 157389001
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157389001 tumor necrosis factor, alpha-induced protein
8-like 2 [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157389001 tumor necrosis factor, alpha-induced protein 8-like... 362 e-100
gi|59709436 tumor necrosis factor, alpha-induced protein 8-like ... 209 8e-55
gi|117676370 tumor necrosis factor, alpha-induced protein 8 isof... 208 2e-54
gi|117676365 tumor necrosis factor, alpha-induced protein 8 isof... 208 2e-54
gi|22748781 tumor necrosis factor, alpha-induced protein 8-like ... 206 1e-53
gi|239508712 PREDICTED: similar to rCG47812 [Homo sapiens] 30 1.2
gi|212286181 parvin, gamma [Homo sapiens] 28 4.5
gi|212286179 parvin, gamma [Homo sapiens] 28 4.5
gi|11545879 parvin, gamma [Homo sapiens] 28 4.5
gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens] 27 7.6
>gi|157389001 tumor necrosis factor, alpha-induced protein 8-like 2
[Homo sapiens]
Length = 184
Score = 362 bits (928), Expect = e-100
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVI 60
MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVI
Sbjct: 1 MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVI 60
Query: 61 KDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLL 120
KDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLL
Sbjct: 61 KDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLL 120
Query: 121 TECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGPDFTQHLGKICDGLRKLLD 180
TECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGPDFTQHLGKICDGLRKLLD
Sbjct: 121 TECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGPDFTQHLGKICDGLRKLLD 180
Query: 181 EGKL 184
EGKL
Sbjct: 181 EGKL 184
>gi|59709436 tumor necrosis factor, alpha-induced protein 8-like 3
[Homo sapiens]
Length = 292
Score = 209 bits (533), Expect = 8e-55
Identities = 100/180 (55%), Positives = 142/180 (78%), Gaps = 2/180 (1%)
Query: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDL 63
FSSKSLALQA+KK+LSK+A ++VA++ ID+TSSE+ DELY+V+KE+TH++ +A +++KDL
Sbjct: 110 FSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHTHNKKEAHKIMKDL 169
Query: 64 IKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTEC 123
IKVAIK+ +L+RN F EL + +FR+KL Q AMT +SF EV++TF+ VL+ LL EC
Sbjct: 170 IKVAIKIGILYRNNQFSQEELVIVEKFRKKLNQTAMTIVSFYEVEYTFDRNVLSNLLHEC 229
Query: 124 RDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYG--PDFTQHLGKICDGLRKLLDE 181
+D++ ELV+ HLTP++HGRI HVF+HF+D L+ LY D +L +IC+G+ KLLDE
Sbjct: 230 KDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKRICEGINKLLDE 289
>gi|117676370 tumor necrosis factor, alpha-induced protein 8 isoform
b [Homo sapiens]
Length = 188
Score = 208 bits (530), Expect = 2e-54
Identities = 99/180 (55%), Positives = 140/180 (77%), Gaps = 2/180 (1%)
Query: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDL 63
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV++EYT ++ +A+++IK+L
Sbjct: 6 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEKIIKNL 65
Query: 64 IKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTEC 123
IK IK+A+L+RN F ELAL +F++K+ Q AMT +SF +VD+TF+ VL+ LL EC
Sbjct: 66 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSRLLNEC 125
Query: 124 RDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKLLDE 181
R++L ++++ HLT KSHGR+ +VFDHFSD L ALY P +F HL K+CDG+ K+LDE
Sbjct: 126 REMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGINKMLDE 185
>gi|117676365 tumor necrosis factor, alpha-induced protein 8 isoform
a [Homo sapiens]
Length = 198
Score = 208 bits (530), Expect = 2e-54
Identities = 99/180 (55%), Positives = 140/180 (77%), Gaps = 2/180 (1%)
Query: 4 FSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDL 63
F+SK+LA+QA+KK+L KM +S+A ID+TSSEVLDELYRV++EYT ++ +A+++IK+L
Sbjct: 16 FNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEKIIKNL 75
Query: 64 IKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTEC 123
IK IK+A+L+RN F ELAL +F++K+ Q AMT +SF +VD+TF+ VL+ LL EC
Sbjct: 76 IKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSRLLNEC 135
Query: 124 RDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKLLDE 181
R++L ++++ HLT KSHGR+ +VFDHFSD L ALY P +F HL K+CDG+ K+LDE
Sbjct: 136 REMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGINKMLDE 195
>gi|22748781 tumor necrosis factor, alpha-induced protein 8-like 1
[Homo sapiens]
Length = 186
Score = 206 bits (523), Expect = 1e-53
Identities = 106/186 (56%), Positives = 139/186 (74%), Gaps = 2/186 (1%)
Query: 1 MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVI 60
M++FS+KSLALQA+KKLLSKMA ++V + +D+TSSEVLDELYR ++E+T SR +AQ+++
Sbjct: 1 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKML 60
Query: 61 KDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLL 120
K+L+KVA+K+ +L R G ELAL RFR + R AMTA+SF +VDFTF+ VLA L
Sbjct: 61 KNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAVGL 120
Query: 121 TECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKL 178
ECRD+L + V HLT KSHGRI HVF H +D L ALYGP + HL +IC+GL ++
Sbjct: 121 LECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRM 180
Query: 179 LDEGKL 184
LDEG L
Sbjct: 181 LDEGSL 186
>gi|239508712 PREDICTED: similar to rCG47812 [Homo sapiens]
Length = 812
Score = 30.0 bits (66), Expect = 1.2
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 128 LELVEHHLTPK-SHGRIRHVFDHFSDPGLLTALYGPD 163
LELVEH L GR+R V H PGL ++GP+
Sbjct: 579 LELVEHELAQACQQGRLRVVPSHDVAPGLGIQVFGPE 615
>gi|212286181 parvin, gamma [Homo sapiens]
Length = 331
Score = 28.1 bits (61), Expect = 4.5
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 35/136 (25%)
Query: 32 DETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFR 91
DE +V DEL++++ E ++ +K AI V + G S L T+F
Sbjct: 191 DEPPKDVFDELFKLAPEKVNA-----------VKEAIVNFVNQKLDRLGLSVQNLDTQFA 239
Query: 92 QKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRH----VF 147
G + L G+++ F L L E +LTP S + H
Sbjct: 240 D----GVILLLLIGQLEGFF----------------LHLKEFYLTPNSPAEMLHNVTLAL 279
Query: 148 DHFSDPGLLTALYGPD 163
+ D GLL+ P+
Sbjct: 280 ELLKDEGLLSCPVSPE 295
>gi|212286179 parvin, gamma [Homo sapiens]
Length = 331
Score = 28.1 bits (61), Expect = 4.5
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 35/136 (25%)
Query: 32 DETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFR 91
DE +V DEL++++ E ++ +K AI V + G S L T+F
Sbjct: 191 DEPPKDVFDELFKLAPEKVNA-----------VKEAIVNFVNQKLDRLGLSVQNLDTQFA 239
Query: 92 QKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRH----VF 147
G + L G+++ F L L E +LTP S + H
Sbjct: 240 D----GVILLLLIGQLEGFF----------------LHLKEFYLTPNSPAEMLHNVTLAL 279
Query: 148 DHFSDPGLLTALYGPD 163
+ D GLL+ P+
Sbjct: 280 ELLKDEGLLSCPVSPE 295
>gi|11545879 parvin, gamma [Homo sapiens]
Length = 331
Score = 28.1 bits (61), Expect = 4.5
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 35/136 (25%)
Query: 32 DETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFR 91
DE +V DEL++++ E ++ +K AI V + G S L T+F
Sbjct: 191 DEPPKDVFDELFKLAPEKVNA-----------VKEAIVNFVNQKLDRLGLSVQNLDTQFA 239
Query: 92 QKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRH----VF 147
G + L G+++ F L L E +LTP S + H
Sbjct: 240 D----GVILLLLIGQLEGFF----------------LHLKEFYLTPNSPAEMLHNVTLAL 279
Query: 148 DHFSDPGLLTALYGPD 163
+ D GLL+ P+
Sbjct: 280 ELLKDEGLLSCPVSPE 295
>gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens]
Length = 1012
Score = 27.3 bits (59), Expect = 7.6
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 1 MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVI 60
+ES ++SLA+ + +L++ + + E E+L + + ++ SR + R++
Sbjct: 410 LESVKAQSLAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLL 469
Query: 61 KDLIKVAIKVAVLHR 75
L + A ++AV +
Sbjct: 470 NRLAQPAPELAVFQK 484
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,410,392
Number of Sequences: 37866
Number of extensions: 245573
Number of successful extensions: 579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 10
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.